REL PDBe PDBe PDBe 2015-06-01 2015-07-15 2015-08-26 2015-09-09 The structure of YnaI implies structural and mechanistic conservation in the MscS-family of mechanosensitive channels Bottcher B Prazak V Rasmussen A Black SS Rasmussen T YnaI, mechanosensitive channels, lipid-protein interaction, osmotic stress Bottcher B Prazak V Rasmussen A Black SS Rasmussen T The Structure of YnaI Implies Structural and Mechanistic Conservation in the MscS Family of Mechanosensitive Channels. STRUCTURE 23 1705 1714 2015 26256535 doi:10.1016/j.str.2015.06.023 Low conductance mechanosensitive channel YnaI Low conductance mechanosensitive channel YnaI 7 1 0.271 YnaI Escherichia coli MJF641 Pasma membrane 0.03876 7 heptamer false P0AEB5 GO:0055085 IPR006685 IPR011014 IPR010920 IPR011066 IPR006686 singleParticle particle 2.2 7.2
1.2/1.3 Quantifoil 400 mesh copper Rh/grids, glow discharge for 1 min in air
 ETHANE 100 HOMEMADE PLUNGER blot for 15 s with 2 layers of filter paper Whatman No 1 before plunging into Ethane cooled by N2; heater is used for preventing freezing of ethane; plunger has an environmental chamber, which is humidified with 2 water soaked sponges (Bellare Design); Bellare design of FEI TECNAI F20 FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 200 2 1.39 5.7 62000.0 GATAN LIQUID NITROGEN 95 at 200,000 magnification on carbon; computationally during image processing 2013-03-15 TVIPS TEMCAM-F416 (4k x 4k) 15.6 3308 25 12. FEI TECNAI F20 FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 200 2 1.39 5.7 62000.0 GATAN LIQUID NITROGEN 95 at 200,000 magnification on carbon; computationally during image processing 2013-03-15 TVIPS TEMCAM-F416 (4k x 4k) 15.6 3308 25 12. FEI TECNAI F20 FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 200 2 1.39 5.7 62000.0 GATAN LIQUID NITROGEN 95 at 200,000 magnification on carbon; computationally during image processing 2013-04-07 TVIPS TEMCAM-F416 (4k x 4k) 15.6 3308 25 12. FEI TECNAI F20 FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 200 2 1.39 5.7 62000.0 GATAN LIQUID NITROGEN 95 at 200,000 magnification on carbon; computationally during image processing 2013-04-15 TVIPS TEMCAM-F416 (4k x 4k) 15.6 3308 25 12. FEI TECNAI F20 FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 200 2 1.39 5.7 62000.0 GATAN LIQUID NITROGEN 95 at 200,000 magnification on carbon; computationally during image processing 2013-04-17 TVIPS TEMCAM-F416 (4k x 4k) 15.6 3308 25 12. FEI TECNAI F20 FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 200 2 1.39 5.7 62000.0 GATAN LIQUID NITROGEN 95 at 200,000 magnification on carbon; computationally during image processing 2013-04-19 TVIPS TEMCAM-F416 (4k x 4k) 15.6 3308 25 12.
particle image were selected manually with e2-boxer, initial reference map was determined with Imagic, particle orientations were refined with Relion 1.3
each particle
 C7 OTHER 12.6 OTHER Imagic, Relion
resolution was determined from independently processed halves
7202
euler angles were determined with relion using auto_refine
 emd_3035.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 160 160 160 0 0 0 160 160 160 276.48 276.48 276.48 90.0 90.0 90.0 X Y Z -0.03759287 0.12191901 0.00122589 0.01530758 1.728 1.728 1.728 0.045 AUTHOR Reconstruction of YnaI
::::EMDATABANK.org::::EMD-3035::::
 2OAU A B C D E F G RIGID BODY FIT Chimera
The structure of the related MscS (2oAU) was fitted manually as rigid body, the fit was optimized by the fit in map option of chimera using residues 129-281 of MscS (cytosolic part)
overlap REAL
emd_3035.png
emd_3035_fsc.xml