<emd xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" emdb_id="EMD-3033" version="3.0.1.1" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v3/v3_0_1_1/emdb_relaxed.xsd">
   <admin>
      <current_status>
         <code>REL</code>
         <processing_site>PDBe</processing_site>
      </current_status>
      <sites>
         <deposition>PDBe</deposition>
         <last_processing>PDBe</last_processing>
      </sites>
      <key_dates>
         <deposition>2015-05-30</deposition>
         <header_release>2015-07-15</header_release>
         <map_release>2015-08-26</map_release>
         <update>2015-09-23</update>
      </key_dates>
      <title>Structure of PhnGHIJK complex by negative stain electron microscopy</title>
      <authors_list>
         <author>Seweryn P</author>
         <author>Bich Van L</author>
         <author>Kjeldgaard M</author>
         <author>Russo CJ</author>
         <author>Passmore LA</author>
         <author>Hove-Jensen B</author>
         <author>Jochimsen B</author>
         <author>Brodersen DE</author>
      </authors_list>
      <keywords>phosphorus metabolism, carbon-phosphorous lyase, phosphonate, PhnG, PhnH, PhnI, PhnJ, PhnK</keywords>
   </admin>
   <crossreferences>
      <citation_list>
         <primary_citation>
            <journal_citation published="true">
               <author order="1">Seweryn P</author>
               <author order="2">Van LB</author>
               <author order="3">Kjeldgaard M</author>
               <author order="4">Russo CJ</author>
               <author order="5">Passmore LA</author>
               <author order="6">Hove-Jensen B</author>
               <author order="7">Jochimsen B</author>
               <author order="8">Brodersen DE</author>
               <title>Structural insights into the bacterial carbon-phosphorus lyase machinery.</title>
               <journal>NATURE</journal>
               <volume>525</volume>
               <first_page>68</first_page>
               <last_page>72</last_page>
               <year>2015</year>
               <external_references type="PUBMED">26280334</external_references>
               <external_references type="DOI">doi:10.1038/nature14683</external_references>
            </journal_citation>
         </primary_citation>
      </citation_list>
   </crossreferences>
   <sample>
      <name>Escherichia coli PhnGHIJK complex</name>
      <supramolecule_list>
         <sample_supramolecule supramolecule_id="1000">
            <name>Escherichia coli PhnGHIJK complex</name>
            <number_unique_components>5</number_unique_components>
            <molecular_weight>
               <theoretical units="MDa">0.268</theoretical>
            </molecular_weight>
         </sample_supramolecule>
      </supramolecule_list>
      <macromolecule_list>
         <protein_or_peptide macromolecule_id="1">
            <name>PhnG</name>
            <natural_source database="NCBI">
               <organism ncbi="562">Escherichia coli</organism>
            </natural_source>
            <molecular_weight>
               <theoretical units="MDa">0.021</theoretical>
            </molecular_weight>
            <number_of_copies>2</number_of_copies>
            <oligomeric_state>heterodimer</oligomeric_state>
            <recombinant_exp_flag>true</recombinant_exp_flag>
            <recombinant_expression database="NCBI">
               <recombinant_organism ncbi="562">Escherichia coli</recombinant_organism>
               <recombinant_plasmid>pHO575</recombinant_plasmid>
            </recombinant_expression>
            <sequence>
               </sequence>
         </protein_or_peptide>
         <protein_or_peptide macromolecule_id="2">
            <name>PhnH</name>
            <natural_source database="NCBI">
               <organism ncbi="562">Escherichia coli</organism>
            </natural_source>
            <molecular_weight>
               <theoretical units="MDa">0.021</theoretical>
            </molecular_weight>
            <number_of_copies>2</number_of_copies>
            <oligomeric_state>heterodimer</oligomeric_state>
            <recombinant_exp_flag>true</recombinant_exp_flag>
            <recombinant_expression database="NCBI">
               <recombinant_organism ncbi="562">Escherichia coli</recombinant_organism>
               <recombinant_plasmid>pHO575</recombinant_plasmid>
            </recombinant_expression>
            <sequence>
               </sequence>
         </protein_or_peptide>
         <protein_or_peptide macromolecule_id="3">
            <name>PhnI</name>
            <natural_source database="NCBI">
               <organism ncbi="562">Escherichia coli</organism>
            </natural_source>
            <molecular_weight>
               <theoretical units="MDa">0.039</theoretical>
            </molecular_weight>
            <number_of_copies>2</number_of_copies>
            <oligomeric_state>heterodimer</oligomeric_state>
            <recombinant_exp_flag>true</recombinant_exp_flag>
            <recombinant_expression database="NCBI">
               <recombinant_organism ncbi="562">Escherichia coli</recombinant_organism>
               <recombinant_plasmid>pHO575</recombinant_plasmid>
            </recombinant_expression>
            <sequence>
               </sequence>
         </protein_or_peptide>
         <protein_or_peptide macromolecule_id="4">
            <name>PhnJ</name>
            <natural_source database="NCBI">
               <organism ncbi="562">Escherichia coli</organism>
            </natural_source>
            <molecular_weight>
               <theoretical units="MDa">0.032</theoretical>
            </molecular_weight>
            <number_of_copies>2</number_of_copies>
            <oligomeric_state>heterodimer</oligomeric_state>
            <recombinant_exp_flag>true</recombinant_exp_flag>
            <recombinant_expression database="NCBI">
               <recombinant_organism ncbi="562">Escherichia coli</recombinant_organism>
               <recombinant_plasmid>pHO575</recombinant_plasmid>
            </recombinant_expression>
            <sequence>
               </sequence>
         </protein_or_peptide>
         <protein_or_peptide macromolecule_id="5">
            <name>PhnK</name>
            <natural_source database="NCBI">
               <organism ncbi="562">Escherichia coli</organism>
            </natural_source>
            <molecular_weight>
               <theoretical units="MDa">0.028</theoretical>
            </molecular_weight>
            <number_of_copies>2</number_of_copies>
            <oligomeric_state>monomer</oligomeric_state>
            <recombinant_exp_flag>true</recombinant_exp_flag>
            <recombinant_expression database="NCBI">
               <recombinant_organism ncbi="562">Escherichia coli</recombinant_organism>
               <recombinant_plasmid>pHO575</recombinant_plasmid>
            </recombinant_expression>
            <sequence>
               </sequence>
         </protein_or_peptide>
      </macromolecule_list>
   </sample>
   <structure_determination_list>
      <structure_determination structure_determination_id="1">
         <method>singleParticle</method>
         <aggregation_state>particle</aggregation_state>
         <specimen_preparation_list>
            <single_particle_preparation preparation_id="1">
               <staining>
                  <type>NEGATIVE</type>
                  <details>3% ammonium molybdate pH 8.0 followed by 2% uranyl acetate</details>
               </staining>
               <grid>
                  <details>Quantifoil R2/2 holey carbon on copper mesh grids, covered with an additional thin film of amorphous carbon</details>
               </grid>
               <vitrification>
                  <cryogen_name>NONE</cryogen_name>
                  <instrument>OTHER</instrument>
               </vitrification>
            </single_particle_preparation>
         </specimen_preparation_list>
         <microscopy_list>
            <single_particle_microscopy microscopy_id="1">
               <microscope>FEI TECNAI 12</microscope>
               <illumination_mode>FLOOD BEAM</illumination_mode>
               <imaging_mode>BRIGHT FIELD</imaging_mode>
               <electron_source>TUNGSTEN HAIRPIN</electron_source>
               <acceleration_voltage units="kV">120</acceleration_voltage>
               <nominal_defocus_min units="&#181;m">0.832</nominal_defocus_min>
               <nominal_defocus_max units="&#181;m">1.974</nominal_defocus_max>
               <nominal_magnification>44000.0</nominal_magnification>
               <specimen_holder_model>SIDE ENTRY, EUCENTRIC</specimen_holder_model>
               <date>2013-07-26</date>
               <image_recording_list>
                  <image_recording>
                     <film_or_detector_model category="CCD">GATAN ULTRASCAN 4000 (4k x 4k)</film_or_detector_model>
                     <number_real_images>105</number_real_images>
                     <average_electron_dose_per_image units="e/&#8491;^2">20</average_electron_dose_per_image>
                  </image_recording>
               </image_recording_list>
            </single_particle_microscopy>
         </microscopy_list>
         <singleparticle_processing image_processing_id="1">
            <details>Particles manually picked using EMAN Boxer. 2D and 3D processing in Relion.</details>
            <ctf_correction>
               <details>CTFFIND3</details>
            </ctf_correction>
            <final_reconstruction>
               <resolution res_type="BY AUTHOR" units="&#8491;">28.0</resolution>
               <resolution_method>FSC 0.5 CUT-OFF</resolution_method>
               <software_list>
                  <software>
                     <name>Relion</name>
                  </software>
               </software_list>
               <number_images_used>10033</number_images_used>
            </final_reconstruction>
         </singleparticle_processing>
         <singleparticle_processing image_processing_id="2">
            <details>Particles manually picked using EMAN Boxer. 2D and 3D processing in Relion.</details>
            <ctf_correction>
               <details>CTFFIND3</details>
            </ctf_correction>
            <final_reconstruction>
               <applied_symmetry>
                  <point_group>C1</point_group>
               </applied_symmetry>
               <resolution res_type="BY AUTHOR" units="&#8491;">16.0</resolution>
               <resolution_method>OTHER</resolution_method>
               <software_list>
                  <software>
                     <name>Relion</name>
                  </software>
               </software_list>
               <number_images_used>10033</number_images_used>
            </final_reconstruction>
         </singleparticle_processing>
      </structure_determination>
   </structure_determination_list>
   <map format="CCP4" size_kbytes="687">
      <file>emd_3033.map.gz</file>
      <symmetry>
         <space_group>1</space_group>
      </symmetry>
      <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
      <dimensions>
         <col>56</col>
         <row>56</row>
         <sec>56</sec>
      </dimensions>
      <origin>
         <col>0</col>
         <row>0</row>
         <sec>0</sec>
      </origin>
      <spacing>
         <x>56</x>
         <y>56</y>
         <z>56</z>
      </spacing>
      <cell>
         <a units="&#8491;">171.92</a>
         <b units="&#8491;">171.92</b>
         <c units="&#8491;">171.92</c>
         <alpha units="deg">90.0</alpha>
         <beta units="deg">90.0</beta>
         <gamma units="deg">90.0</gamma>
      </cell>
      <axis_order>
         <fast>X</fast>
         <medium>Y</medium>
         <slow>Z</slow>
      </axis_order>
      <statistics>
         <minimum>-0.00770088</minimum>
         <maximum>1.36574364</maximum>
         <average>0.09359466</average>
         <std>0.21601628</std>
      </statistics>
      <pixel_spacing>
         <x units="&#8491;">3.07</x>
         <y units="&#8491;">3.07</y>
         <z units="&#8491;">3.07</z>
      </pixel_spacing>
      <contour_list>
         <contour primary="true">
            <level>0.71</level>
            <source>AUTHOR</source>
         </contour>
      </contour_list>
      <annotation_details>3D reconstruction of C-P lyase core complex including K subunit</annotation_details>
      <details>::::EMDATABANK.org::::EMD-3033::::</details>
   </map>
   <validation>
      <fsc_curve>
         <file>emd_3033_fsc.xml</file>
      </fsc_curve>
   </validation>
</emd>