2024-03-27 REL PDBj PDBj PDBj 2020-04-27 2020-06-03 2020-06-03 2024-03-27 Ministry of Science and Technology (MoST, China) 2017YFC0840300 China Ministry of Science and Technology (MoST, China) 2020YFA0707500 China Ministry of Science and Technology (MoST, China) 2018YFA0507200 China Chinese Academy of Sciences XDB08020200 China National Natural Science Foundation of China (NSFC) 81520108019 China National Natural Science Foundation of China (NSFC) 813300237 China National Natural Science Foundation of China (NSFC) 32041007 China COVID-19 RNA-dependent RNA polymerase post-translocated catalytic complex Wang Q Gao Y Ji W Mu A Rao Z COVID-19, 2019-nCoV, SARS-CoV-2, Virus, RdRp, nsp12, nsp7, nsp8, RTC, cryo-EM, Viral protein, RNA polymerase, drug target, antiviral, replication transcription complex, VIRAL PROTEIN-RNA complex Wang Q Wu J Wang H Gao Y Liu Q Mu A Ji W Yan L Zhu Y Zhu C Fang X Yang X Huang Y Gao H Liu F Ge J Sun Q Yang X Xu W Liu Z Yang H Lou Z Jiang B Guddat LW Gong P Rao Z Structural Basis for RNA Replication by the SARS-CoV-2 Polymerase. Cell 182 417 428.e13 2020 32526208 doi:10.1016/j.cell.2020.05.034 1097-4172 7bzf FULLOVERLAP Structure of COVID-19 RNA-dependent RNA polymerase in complex with RNA Structure of COVID-19 RNA-dependent RNA polymerase in complex with RNA 0 1 2 3 4 5
full-length COVID-19 nsp12 (residues S1-Q932) was incubated with nsp7 (residues S1-Q83) and nsp8 (A1-Q198), and in complex with RNA template and product.
Severe acute respiratory syndrome coronavirus 2 0.155 RNA-directed RNA polymerase Severe acute respiratory syndrome coronavirus 2 0.10816246099999999 1 Escherichia coli BL21(DE3) LEVO SADAQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNY QHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKK DWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSL LMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDDRCILHCANFNVLFSTV FPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAA LTNNVAFQTVKPGNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYF DCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGV SICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLAR KHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYV RNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCW TETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADV FHLYLQYIRKLHDELTGHMLDMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQHHHHHHHHHH P0DTD1 2.7.7.48 Non-structural protein 8 Severe acute respiratory syndrome coronavirus 2 0.021903047 2 Escherichia coli BL21(DE3) LEVO AIASEFSSLPSYAAFATAQEAYEQAVANGDSEVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQARSEDKR AKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVIPDYNTYKNTCDGTTFTYASALWEIQQVV DADSKIVQLSEISMDNSPNLAWPLIVTALRANSAVKLQ P0DTD1 Non-structural protein 7 Severe acute respiratory syndrome coronavirus 2 0.009248804 1 Escherichia coli BL21(DE3) LEVO SKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRA TLQ P0DTD1 RNA (31-MER) Foot-and-mouth disease virus 0.010038037 1 GGGAGAUGAAAGUCCACCUGUGUCGUCGAAA RNA (5'-R(*UP*GP*UP*UP*CP*GP*AP*CP*GP*AP*CP*AP*CP*A)-3') Foot-and-mouth disease virus 0.004446708 1 UGUUCGACGACACA ZINC ION 6.5409e-05 2 ZN singleParticle particle 0.7 7.5 Quantifoil R0.6/1 CARBON HOLEY ETHANE 100 281
This sample was mono disperse.
 FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 50.0 2.7 1.0 1.0 2.0 2.0 165000.0 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN 78.5 78.5 10.0 None. None GIF Bioquantum 40
Preliminary grid screening was preformed manually.
GATAN K2 QUANTUM (4k x 4k) SUPER-RESOLUTION 3838 3710 2-40 2 8494 5.0 60.0 1
The selected images were normalized.
1235162
The startup models were generated automatically.
 3.26 FSC 0.143 CUT-OFF cryoSPARC 2.9.1 119662 MAXIMUM LIKELIHOOD cryoSPARC 2.9.1
The initial angle assignment was generated by Ab-initio reconstruction.
 MAXIMUM LIKELIHOOD cryoSPARC 2.9.1 5 150696.0 cryoSPARC 2.9.1 emd_30252.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 300 300 300 0 0 0 300 300 300 246.0 246.0 246.0 90.0 90.0 90.0 X Y Z -1.5142512 2.1577 0.000459461 0.059039507 0.82 0.82 0.82 0.3 AUTHOR 6NUR A 117-903 PDB experimental model 6NUR B 77-191 PDB experimental model 6NUR C 2-71 PDB experimental model 6NUR D 84-192 PDB experimental model RIGID BODY FIT correlation coefficient 58.5 emd_30252_msk_1.map emd_30252_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 300 300 300 0 0 0 300 300 300 246.0 246.0 246.0 90.0 90.0 90.0 X Y Z -1.3036908 1.319481 0.0013917164 0.16107076 0.82 0.82 0.82 AUTHOR emd_30252_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 300 300 300 0 0 0 300 300 300 246.0 246.0 246.0 90.0 90.0 90.0 X Y Z -1.2855016 1.2693982 0.0013849521 0.16151194 0.82 0.82 0.82 AUTHOR