2024-03-27 REL PDBj PDBj PDBj 2020-04-20 2021-02-10 2021-02-10 2024-03-27 Japan Society for the Promotion of Science (JSPS) 25221106 Japan Japan Agency for Medical Research and Development (AMED) 0101117 Japan Japan Agency for Medical Research and Development (AMED) 0101020 Japan The cryo-EM structure of CENP-A nucleosome in complex with CENP-C peptide and CENP-N N-terminal domain Ariyoshi M Makino F CENP-A nucleosome, CENP-C, CENP-N, complex, kinetochore, NUCLEAR PROTEIN, CELL CYCLE-DNA complex Ariyoshi M Makino F Watanabe R Nakagawa R Kato T Namba K Arimura Y Fujita R Kurumizaka H Okumura EI Hara M Fukagawa T Cryo-EM structure of the CENP-A nucleosome in complex with phosphorylated CENP-C. Embo J. UK 40 e105671 e105671 2021 33463726 doi:10.15252/embj.2020105671 1460-2075 0897 EMJODG 7bxt FULLOVERLAP CENP-A nucleosome in complex with CENP-C peptide and CNEP-N N-terminal domain CENP-A nucleosome in complex with CENP-C peptide and CNEP-N N-terminal domain 0 1 2 3 4 5 6 7 8 Ectocarpus siliculosus 0.33 Histone H3,Histone H3-like centromeric protein A 1 1 Homo sapiens Histone H4 1 2 Homo sapiens Histone H2A type 1-B/E 1 3 Homo sapiens Histone H2B type 2-E 1 4 Escherichia coli (strain B / BL21-DE3) DNA 1 5 6 CENP-C 1 7 Maltodextrin-binding protein,Centromere protein N 1 8 Histone H3,Histone H3-like centromeric protein A Gallus gallus 0.016372217
chimeric protein, chicken histone H3 (aa 1-64)-chicken CENP-A (aa 52-131)
2 Escherichia coli BL21(DE3) LEVO GSHMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRRQPFARVVREICL LFTRGVDYRWQAMALLALQEAAEAFLVHLLEDAYLCSLHARRVTLYPKDLQLARRLRGLQGEGF Q6XXM1 Histone H4 Homo sapiens 0.011676702999999998 2 Escherichia coli LEVO GSHMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHA KRKTVTAMDVVYALKRQGRTLYGFGG P62805 Histone H2A type 1-B/E Homo sapiens 0.014447825 2 Escherichia coli LEVO GSHMSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKT RIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTESHHKAKGK P04908 Histone H2B type 2-E Homo sapiens 0.014233517999999999 2 Escherichia coli LEVO GSHMPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGE ASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK Q16778 DNA (145-mer) synthetic construct 0.044529398 1 (DA)(DT)(DC)(DA)(DG)(DA)(DA)(DT)(DC)(DC)(DC)(DG)(DG)(DT)(DG)(DC)(DC)(DG)(DA)(DG) (DG)(DC)(DC)(DG)(DC)(DT)(DC)(DA)(DA)(DT)(DT)(DG)(DG)(DT)(DC)(DG)(DT)(DA)(DG)(DA) (DC)(DA)(DG)(DC)(DT)(DC)(DT)(DA)(DG)(DC)(DA)(DC)(DC)(DG)(DC)(DT)(DT)(DA)(DA)(DA) (DC)(DG)(DC)(DA)(DC)(DG)(DT)(DA)(DC)(DG)(DC)(DG)(DC)(DT)(DG)(DT)(DC)(DC)(DC)(DC) (DC)(DG)(DC)(DG)(DT)(DT)(DT)(DT)(DA)(DA)(DC)(DC)(DG)(DC)(DC)(DA)(DA)(DG)(DG)(DG) (DG)(DA)(DT)(DT)(DA)(DC)(DT)(DC)(DC)(DC)(DT)(DA)(DG)(DT)(DC)(DT)(DC)(DC)(DA)(DG) (DG)(DC)(DA)(DC)(DG)(DA)(DG)(DT)(DC)(DA)(DG)(DA)(DT)(DA)(DT)(DA)(DT)(DA)(DC)(DA) (DT)(DC)(DG)(DA)(DT) DNA DNA (145-mer) synthetic construct 0.044982648 1 (DA)(DT)(DC)(DG)(DA)(DT)(DG)(DT)(DA)(DT)(DA)(DT)(DA)(DT)(DC)(DT)(DG)(DA)(DC)(DT) (DC)(DG)(DT)(DG)(DC)(DC)(DT)(DG)(DG)(DA)(DG)(DA)(DC)(DT)(DA)(DG)(DG)(DG)(DA)(DG) (DT)(DA)(DA)(DT)(DC)(DC)(DC)(DC)(DT)(DT)(DG)(DG)(DC)(DG)(DG)(DT)(DT)(DA)(DA)(DA) (DA)(DC)(DG)(DC)(DG)(DG)(DG)(DG)(DG)(DA)(DC)(DA)(DG)(DC)(DG)(DC)(DG)(DT)(DA)(DC) (DG)(DT)(DG)(DC)(DG)(DT)(DT)(DT)(DA)(DA)(DG)(DC)(DG)(DG)(DT)(DG)(DC)(DT)(DA)(DG) (DA)(DG)(DC)(DT)(DG)(DT)(DC)(DT)(DA)(DC)(DG)(DA)(DC)(DC)(DA)(DA)(DT)(DT)(DG)(DA) (DG)(DC)(DG)(DG)(DC)(DC)(DT)(DC)(DG)(DG)(DC)(DA)(DC)(DC)(DG)(DG)(DG)(DA)(DT)(DT) (DC)(DT)(DG)(DA)(DT) DNA CENP-C Gallus gallus 0.00493284 2 LEVO QKIVLPSNTPNVRRTKRIRLKPLEYWRGERVTYTLKPSGRL O57392 Maltodextrin-binding protein,Centromere protein N Gallus gallus 0.071519625
The fusion protein of N-terminal MBP, N-terminal domain of chicken CENP-N and C-terminal histidine tags
2 Escherichia coli LEVO MKIEEGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEI TPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWP LIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSK VNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIAA TMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDEALKDAQTNSSSNNNNNNNNNNLGIEGRENLYFQGRENLYF QGENLYFQGRIMDEVIVEYIRRTVLKIPRDEIMAVLQKWGFLSEAQLQTINFRQTKEGISHSVAQLCEESSADLKQAALL DIIYNHIYPNKRVWSVYHMNKTGEETDFFDFRDFKKKFRRQIQSALINVTINFREYEDNAIWIRIAWGTPYTKPNQYKTS YVVYHSQTPYVFISASVLRSNLPLLCQAMVVASNYHDIHEMELRSHCLNSLKDIVFKRYSQNDPHHHHHH Q1T765 singleParticle particle 1.3 7.5 20.0 C8H18N2O4S HEPES 100.0 NaCl sodium chloride 2.0 C4H10O2S2 DTT 1.0 C10H16N2O8 EDTA 0.1 C32H58N2O7S CHAPS Quantifoil R0.6/1 MOLYBDENUM 200 CARBON HOLEY ARRAY 30.0 GLOW DISCHARGE AIR
Both side
 ETHANE 100 277 FEI VITROBOT MARK IV JEOL CRYO ARM 200 FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 200 150.0 1.4 -1.0 -0.5 -3.5 -7.0 50000.0 45454.0 JEOL CRYOSPECPORTER NITROGEN 80.0 80.0 GATAN K2 SUMMIT (4k x 4k) COUNTING 3838 3710 1-50 5 5346 10.0 1.2 1 421635 EMD-8140 1 C2 FOURIER SPACE 4.2 FSC 0.143 CUT-OFF RELION 3.08 118294 MAXIMUM LIKELIHOOD RELION 3.08 MAXIMUM LIKELIHOOD RELION 3.08 5 80000.0 RELION 3.08 emd_30237.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 192 192 192 0 0 0 192 192 192 282.24 282.24 282.24 90.0 90.0 90.0 X Y Z -0.077114105 0.13460799 0.00033561292 0.005340674 1.4699999 1.4699999 1.4699999 0.025 AUTHOR ggCENP-A nucleosome in complex with CENP-C peptide (643-683) and CENP-N (1-212) emd_30237_msk_1.map emd_30237_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 192 192 192 0 0 0 192 192 192 282.24 282.24 282.24 90.0 90.0 90.0 X Y Z -0.020351253 0.07968116 0.0003227216 0.0040426077 1.4699999 1.4699999 1.4699999 AUTHOR 1st half map file for ggCENP-A nucleosome in complex with CENP-C peptide (643-683) and CENP-N (1-212) emd_30237_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 192 192 192 0 0 0 192 192 192 282.24 282.24 282.24 90.0 90.0 90.0 X Y Z -0.024108302 0.07708826 0.00031261306 0.0040450334 1.4699999 1.4699999 1.4699999 AUTHOR 1st half map file for ggCENP-A nucleosome in complex with CENP-C peptide (643-683) and CENP-N (1-212)