<emd xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" emdb_id="EMD-3017" version="3.0.1.1" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v3/v3_0_1_1/emdb_relaxed.xsd">
   <admin>
      <current_status>
         <code>REL</code>
         <processing_site>PDBe</processing_site>
      </current_status>
      <sites>
         <deposition>PDBe</deposition>
         <last_processing>PDBe</last_processing>
      </sites>
      <key_dates>
         <deposition>2015-05-15</deposition>
         <header_release>2015-06-10</header_release>
         <map_release>2015-06-17</map_release>
         <update>2016-07-27</update>
      </key_dates>
      <title>Cryo-EM single particle 3D reconstruction of the trypsin-induced dimeric conformation of E. coli alpha-2-macroglobulin (ECAM)</title>
      <authors_list>
         <author>Garcia Ferrer I</author>
         <author>Arede P</author>
         <author>Gomez Blanco J</author>
         <author>Luque D</author>
         <author>Duquerroy S</author>
         <author>Caston JR</author>
         <author>Goulas T</author>
         <author>Gomis Ruth FX</author>
      </authors_list>
      <keywords>alpha-2-macroglobulin, ECAM, peptidase inhibitor</keywords>
   </admin>
   <crossreferences>
      <citation_list>
         <primary_citation>
            <journal_citation published="true">
               <author order="1">Garcia Ferrer I</author>
               <author order="2">Arede P</author>
               <author order="3">Gomez Blanco J</author>
               <author order="4">Luque D</author>
               <author order="5">Duquerroy S</author>
               <author order="6">Caston JR</author>
               <author order="7">Goulas T</author>
               <author order="8">Gomis Ruth FX</author>
               <title>Structural and functional insights into Escherichia coli alpha-2-macroglobulin endopeptidase snap trap inhibition.</title>
               <journal>PROC.NATL.ACAD.SCI.USA</journal>
               <volume>112</volume>
               <first_page>8290</first_page>
               <last_page>8295</last_page>
               <year>2015</year>
               <external_references type="PUBMED">26100869</external_references>
               <external_references type="DOI">doi:10.1073/pnas.1506538112</external_references>
            </journal_citation>
         </primary_citation>
      </citation_list>
   </crossreferences>
   <sample>
      <name>Trypsin-induced dimeric conformation of the E. coli alpha-2-macroglobulin (ECAM).</name>
      <supramolecule_list>
         <sample_supramolecule supramolecule_id="1000">
            <name>Trypsin-induced dimeric conformation of the E. coli alpha-2-macroglobulin (ECAM).</name>
            <oligomeric_state>Dimeric</oligomeric_state>
            <number_unique_components>1</number_unique_components>
            <molecular_weight>
               <experimental units="MDa">0.36</experimental>
               <theoretical units="MDa">0.36</theoretical>
               <method>Size exclusion chromatography.</method>
            </molecular_weight>
         </sample_supramolecule>
      </supramolecule_list>
      <macromolecule_list>
         <protein_or_peptide macromolecule_id="1">
            <name synonym="ECAM">alpha-2-macroglobulin</name>
            <natural_source database="NCBI">
               <organism ncbi="83333">Escherichia coli K-12</organism>
               <cellular_location>Periplasm</cellular_location>
            </natural_source>
            <molecular_weight>
               <experimental units="MDa">0.18</experimental>
               <theoretical units="MDa">0.18</theoretical>
            </molecular_weight>
            <details>ECAM was reacted with trypsin and the resulting dimeric particle was purified by size-exclusion chormatography</details>
            <number_of_copies>2</number_of_copies>
            <oligomeric_state>Dimeric</oligomeric_state>
            <recombinant_exp_flag>true</recombinant_exp_flag>
            <recombinant_expression database="NCBI">
               <recombinant_organism ncbi="469008">Escherichia coli BL21(DE3)</recombinant_organism>
               <recombinant_plasmid>pCRI8b</recombinant_plasmid>
            </recombinant_expression>
            <sequence>
               <external_references type="UNIPROTKB">P76578</external_references>
            </sequence>
         </protein_or_peptide>
      </macromolecule_list>
   </sample>
   <structure_determination_list>
      <structure_determination structure_determination_id="1">
         <method>singleParticle</method>
         <aggregation_state>particle</aggregation_state>
         <specimen_preparation_list>
            <single_particle_preparation preparation_id="1">
               <concentration units="mg/mL">0.01</concentration>
               <buffer>
                  <ph>7.4</ph>
                  <details>10mM Tris-HCL, 75mM NaCl</details>
               </buffer>
               <grid>
                  <details>Glow discharged carbon coated Cu/Rh 300 mesh Quantifoil R 1.2/1.3um grids.</details>
               </grid>
               <vitrification>
                  <cryogen_name>ETHANE</cryogen_name>
                  <instrument>LEICA EM CPC</instrument>
                  <method>Blot for 1min before plunging with 5ul purified sample.</method>
               </vitrification>
            </single_particle_preparation>
         </specimen_preparation_list>
         <microscopy_list>
            <single_particle_microscopy microscopy_id="1">
               <microscope>FEI TECNAI F20</microscope>
               <illumination_mode>FLOOD BEAM</illumination_mode>
               <imaging_mode>BRIGHT FIELD</imaging_mode>
               <electron_source>FIELD EMISSION GUN</electron_source>
               <acceleration_voltage units="kV">200</acceleration_voltage>
               <nominal_defocus_min units="&#181;m">1.5</nominal_defocus_min>
               <nominal_defocus_max units="&#181;m">3.5</nominal_defocus_max>
               <calibrated_magnification>84269.0</calibrated_magnification>
               <specimen_holder_model>GATAN LIQUID NITROGEN</specimen_holder_model>
               <date>2014-06-12</date>
               <image_recording_list>
                  <image_recording>
                     <film_or_detector_model category="CCD">FEI EAGLE (4k x 4k)</film_or_detector_model>
                     <number_real_images>188</number_real_images>
                  </image_recording>
               </image_recording_list>
            </single_particle_microscopy>
         </microscopy_list>
         <singleparticle_processing image_processing_id="1">
            <details>The XMIPP automatic picking routine was used to select particles.</details>
            <ctf_correction>
               <details>Each image</details>
            </ctf_correction>
            <final_reconstruction>
               <applied_symmetry>
                  <point_group>C1</point_group>
               </applied_symmetry>
               <algorithm>OTHER</algorithm>
               <resolution res_type="BY AUTHOR" units="&#8491;">14.5</resolution>
               <resolution_method>OTHER</resolution_method>
               <software_list>
                  <software>
                     <name>XMIPP3, EMAN2</name>
                  </software>
               </software_list>
               <number_images_used>33536</number_images_used>
            </final_reconstruction>
            <final_two_d_classification>
               <number_classes>64</number_classes>
            </final_two_d_classification>
         </singleparticle_processing>
      </structure_determination>
   </structure_determination_list>
   <map format="CCP4" size_kbytes="2001">
      <file>emd_3017.map.gz</file>
      <symmetry>
         <space_group>1</space_group>
      </symmetry>
      <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
      <dimensions>
         <col>80</col>
         <row>80</row>
         <sec>80</sec>
      </dimensions>
      <origin>
         <col>0</col>
         <row>0</row>
         <sec>0</sec>
      </origin>
      <spacing>
         <x>80</x>
         <y>80</y>
         <z>80</z>
      </spacing>
      <cell>
         <a units="&#8491;">296.0</a>
         <b units="&#8491;">296.0</b>
         <c units="&#8491;">296.0</c>
         <alpha units="deg">90.0</alpha>
         <beta units="deg">90.0</beta>
         <gamma units="deg">90.0</gamma>
      </cell>
      <axis_order>
         <fast>X</fast>
         <medium>Y</medium>
         <slow>Z</slow>
      </axis_order>
      <statistics>
         <minimum>-0.04737835</minimum>
         <maximum>0.08425467</maximum>
         <average>0.00025952</average>
         <std>0.00766156</std>
      </statistics>
      <pixel_spacing>
         <x units="&#8491;">3.7</x>
         <y units="&#8491;">3.7</y>
         <z units="&#8491;">3.7</z>
      </pixel_spacing>
      <contour_list>
         <contour primary="true">
            <level>0.016</level>
            <source>AUTHOR</source>
         </contour>
      </contour_list>
      <annotation_details>Reconstruction of trypsin-induced dimeric E.coli alpha-2-macroglobulin</annotation_details>
      <details>::::EMDATABANK.org::::EMD-3017::::</details>
   </map>
</emd>