REL PDBe PDBe PDBe 2015-04-29 2015-05-06 2015-06-10 2015-07-01 Structure of Target Of Rapapmycin Complex 2 (TORC2) from Saccharomyces cerevisiae Gaubitz C Oliveira TM Prouteau M Leitner A Karuppasamy M Konstantinidou G Rispal D Eltschinger S Robinson GC Thore S Aebersold R Schaffitzel C Loewith R TOR kinase complex, TORC2, cell growth, rapamycin Gaubitz C Oliveira TM Prouteau M Leitner A Karuppasamy M Konstantinidou G Rispal D Eltschinger S Robinson GC Thore S Aebersold R Schaffitzel C Loewith R Molecular basis of the rapamycin insensitivity of Target Of Rapamycin Complex 2. mol.cell 58 977 988 2015 26028537 doi:10.1016/j.molcel.2015.04.031 Yeast Target of Rapamycin Complex 2 Yeast Target of Rapamycin Complex 2
TORC2 complex, which consists of six subunits
dimer 1 1.4 1.4 Size exclusion Yeast TORC2 Saccharomyces cerevisiae Baker's Yeast Plasma membrane MCT (membrane compartment containing TORC2) domain 1.4 1.4
TORC2 is composed of two copies of: Tor2 kinase, Lst8, Avo1, Avo2, Avo3, Bit61/2
1 2 false singleParticle particle 0.01 7.5
50mM HEPES pH 7.5, 5 mM CHAPS, 300 mM KCl, 0,5 mM DTT
 NEGATIVE
Grids with adsorbed protein floated on 2% w/v uranyl acetate for 1 min.
300 mesh grid
 NONE OTHER FEI/PHILIPS CM120T FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 120 26000.0 SIDE ENTRY, EUCENTRIC 2012-04-10 TVIPS TEMCAM-F415 (4k x 4k) 200
200 micrographs (100 tilt pairs)
 0 45
A total of 8,762 RCT pairs were picked manually with tiltpicker (Voss et al, 2009). The additional untilted particles were picked with e2boxer.py (Ludtke, 2010). The 3D reconstruction was calculated with the Xmipp ML tomo and refined with Xmipp MLF 3D (Scheres et al., 2008)
each micrograph
 C1 OTHER 26.0 OTHER Xmipp, Relion 24979 500 emd_2990.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 100 100 100 0 0 0 100 100 100 450.0 450.0 450.0 90.0 90.0 90.0 X Y Z -0.0818112 0.11751353 0.00042925 0.00938699 4.5 4.5 4.5 0.029 AUTHOR Reconstruction of yeast TORC2 - filtered at 26 Angstroms resolution (FSC 0.143 criterion after gold standard refinement). Contour level provided by author - The map was generated from negative stain data, and we determined the correct contour level to display the map to be 2.9 in Pymol.
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emd_2990.tif