2024-01-03 REL RCSB RCSB RCSB 2023-02-15 2023-12-20 2023-12-20 2024-01-03 National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) AI143714 United States Hsu H-C Li H proteasome, inhibitor, 20S, HYDROLASE, HYDROLASE-HYDROLASE INHIBITOR complex Hsu HC Li D Zhan W Ye J Liu YJ Leung A Qin J Crespo B Gamo FJ Zhang H Cui L Roth A Kirkman LA Li H Lin G Nat Commun UK 14 8302 8302 2023 38097652 doi:10.1038/s41467-023-44077-2 2041-1723 8g6e FULLOVERLAP Plasmodium falciparum 20S proteasome complexed with inhibitor TDI-8304 Plasmodium falciparum 20S proteasome complexed with inhibitor TDI-8304 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 Plasmodium falciparum NF54 0.7 Proteasome subunit alpha type-6 Plasmodium falciparum NF54 0.029531655999999996 2 LEVO MVRPSQSMYDRHLTIFSPDGNLYQIEYAIKAVKNTNITSVGVKGENCAVIISQKKMATQYISQDKLLDYNNITNIYNITD EIGCSMVGMPGDCLSMVYKARSEASEFLYSNGYNVNAETLCRNICDKIQVYTQHAYMRLHACSGMIIGIDENNKPELFKF DPSGFCAGYRACVIGNKEQESISVLERLLEKRKKKIQQETIDEDIRNTTILAIEALQTILAFDLKASEIEVAIVSTKNRN FTQISEKEIDNYLTYIAERD W7JVP8 Proteasome subunit alpha type-2 Plasmodium falciparum NF54 0.026556391 2 LEVO MADGEYSFSLTTFSPTGKLVQIEYALNRVSSSSPALGIRAKNGVIIATEKKSPNELIEENSIFKIQQISEHIGIVYAGMP GDFRVLLKRARKEAIRYSLQYGSEILVKELVKIIASIVQEFTQTGGVRPFGLSLLICGVDVYGYHLYQIDPSGCYFNWMA TCVGKDYQNNMSFLEKRYNKDIEIEDAIHTAILTLKESYEGVLNEKNIEIGVAYDNKPFKILTQNEIKDYLIEIE A0A2I0BQ13 Proteasome subunit alpha type Plasmodium falciparum NF54 0.027977664 2 LEVO MARRYDSRTTTFSPEGRLYQVEYALEAINNASITIGLITKDGVILGADKVFISKLIDKANNYEKIYKIDKHIFCGVAGLN ADANILINQSRLYAQRYLYNYNEVQPVSQLVVQICDIKQSYTQYGGLRPYGVSFLIGGYDTKDGYQLYHTDPSGNYSGWF ATAIGTNNLTASSVLKQEWKNDMTLEEGLLLALKTLAKSTDTEIPKSEKIELAYLTNKDGEVYQKYLTEKEIEELIKLYT QKYIKE W7KN95 Proteasome subunit alpha type Plasmodium falciparum NF54 0.027263284999999998 2 LEVO MSYDRAITVFSPDGHLLQVEHALEAVKKGGCAVAIKSSNFAVLAVEKKNIPKLQNPKTTEKLIKLDEHNCLAFAGLNADA RVLVNKTRLECQRYYLNMDEPAPVDYIAKYVAKVQQKFTHRGGVRPFGIATLIAGFKNNKEICIYQTEPSGIYAAWKAQA IGKNAKIVQEFLEKNYQENMEQKDCIFLALKAIFEVVELSSKNVEVALLTEKDLTFIEEQEINSMVELIDQERTKNNEQN E A0A2I0BS43 Proteasome subunit alpha type Plasmodium falciparum NF54 0.028417366999999995 2 LEVO MFSTRSEYDRGVNTFSPEGRLFQVEYALGAIKLGSTAVGICVNDGVILASERRISSTLIEKDSVEKLLSIDDHIGCAMSG LMADARTLIDYARVECNHYKFIYNENINIKSCVELISELALDFSNLSDSKRKKIMSRPFGVALLIGGVDKNGPCLWYTEP SGTNTRFSAASIGSAQEGAELLLQENYKKDMTFEQAEILALTVLRQVMEDKLSTSNVEICAIKKSDQTFYKYNTDDISRI IDVLPSPVYPTIDMTA A0A2I0BP34 Proteasome subunit alpha type-1 Plasmodium falciparum NF54 0.028742583999999998 2 LEVO MYRNLYDTDNIIYSPEGRLYQVEYASEAIKQGTCAVAIKSKDYVVVSGLKKCISKLSFPQEKIFKIDDYIGISMSGITSD AKVLTKFMQNECLSHKFLYNENINIESLVRSVADKYQKNTQKSSKRAFGVGLMIAAYHNEPCIFETRPNGSYFEYDALSF GARSHASKTYLEKNLHLFEECSLEELILHCLKALKCSLSSESELTISNTALAVVGKNHPWQEISSLQLEEYLSKVKMDAE QEQVEENVQNEAN W7K5W7 Proteasome subunit alpha type-3 Plasmodium falciparum NF54 0.029324294999999997 2 LEVO MAGLSAGYDLSVSTFSPDGRLYQVEYIYKSINNNNTALCLECKDGIICCCINSNMDKNKMIKKNSYNRIYHVNNNIIITY SGFDGDARNIIDRARSEANTYYYNFHTNIPLHILVNRISLYIHAYTLYWHMRPFAASIIISSFNEKDKGDIYCIEPNGAC YKYSGIVIGKNKEMFKTEIEKKDYKDINVRDAIEDIYKFILTSDDHMNKNNLQNLVNFSWICKESSYEFQNIHEEILTPA LNKAVEYIEKLN W7K040 Proteasome subunit beta type-6 Plasmodium falciparum NF54 0.029143936 2 LEVO TTIIGIIYDNGVMLACDSRTSSGTFISNKCSRKINRINENLYVCRSGASAHSQKIIEIIKHYCVSMKNENRKKGRFHEGE TIYDETTYDEEIDIDSINYLDYNNNNDNNLVTKNKYFYEDKFNDYNPLVENVAHITKKIIYTNNNFLSCALIFGGYDKIK KQQLYAVNLNGSIIEKHDFAVSGSGSIYIQSYLQDKYKKFMTKKECFNLILNCVKYAMHNDNSSGGLIRIVNITKSFVEE FTVVNTQMNFQY W7JUG8 Proteasome subunit beta Plasmodium falciparum NF54 0.025104884999999997 2 LEVO TTICGLVCQNAVILGADTRATEGPIVADKNCSKLHYISKNIWCAGAGVAGDLEHTTLWLQHNVELHRLNTNTQPRVSMCV SRLTQELFKYQGYKVCAIVLGGVDVNGPQLYGIHPHGSSCLLPFTALGSGSLNAMAVLEAKYRDNMTIEEGKNLVCEAIC AGIFNDLGSGGNVDICVITKDSYQHIRPYKEPNMRLYHLPHPTIYPKGTTPILSEKIEYIKKFISVEDA W7K1J4 Proteasome subunit beta Plasmodium falciparum NF54 0.024533131 2 LEVO MGSIYNYNGGCVLGMSGSNCVAIACDLRLGANTFTTVSTKFSKIFKMNNNVYVGLSGLATDIQTLYEILRYRVNLYEVRQ DAEMDVECFANMLSSILYSNRFSPYFVNPIVVGFKLKHYVDEEGEKKVNYEPYLTAYDLIGAKCETRDFVVNGVTSEQLF GMCESLYVKDQDENGLFETISQCLLSALDRDCISGWGAEVLVLTPEKIIKKKLKARMD A0A2I0BXS0 Proteasome subunit beta Plasmodium falciparum NF54 0.022889105 2 LEVO MDTLIGLRGNNFVVLAADTYSINSIIKLKNDDNTKFYDIHGNKCLLLGGSIGDRLQFGEFIRKNVHLYQYQNNTDMFVKS FAFFTRKNLAYYLRRNPFEVNCLIAGYDKKDGYQLYWCDYLSNMDSVNKGAHGYGAYLVSAILDKYYHENLTVDEALDIF KLCFEELKKRFLLTQINYELRIMYDNKVETQYVTV W7JKG5 Proteasome subunit beta Plasmodium falciparum NF54 0.023620646 2 LEVO TTTLAFKFKDGIIVAVDSRASMGSFISSQNVEKIIEINKNILGTMAGGAADCLYWEKYLGKIIKIYELRNNEKISVRAAS TILSNILYQYKGYGLCCGIILSGYDHTGFNMFYVDDSGKKVEGNLFSCGSGSTYAYSILDSAYDYNLNLDQAVELARNAI YHATFRDGGSGGKVRVFHIHKNGYDKIIEGEDVFDLHYHYTNPEQKDQYVM W7K6A8 Proteasome subunit beta Plasmodium falciparum NF54 0.027301203 2 LEVO MDLILYNDNLTEKKTEKENVIEHGRGFKRWYPYIDNGGTVIGLTGKDYVILAADTRLSLSYSIYTRFCPKISKLTDKCII GSSGMQSDIKTLHSLLQKKIQLFVLEHSHYPDIHVIARLLCVILYSRRFFPYYAFNILAGVDENNKGVLYNYDSVGSYCE ATHSCVGSGSQLILPILDNRVEQKNQLIKNTNFNLGDDINFVKDAITSATERDIYTGDKTLIYVIDKMGINVNTLDLKQD A0A2I0BU46 Proteasome subunit beta Plasmodium falciparum NF54 0.030909892999999997 2 LEVO MTLGPVVTGTSVIAIKYKHGIMIAADRKASYGSYAKFQNVERIFKINNKTVMGFSGELADAQYLHELLTRKNINNLSEKK RKEDMYTPQHYHSYVSRVFYVRKNRIDPLFNNIIIAGINSQKYDNNDDNVLLYTNKNNDDEQNEYKNNEEYKEIHKDDLY IGFVDMHGTNFCDDYITTGYARYFALTLLRDHYKDNMTEEEARILINECLRILYFRDATSSNFIQIVKVTSKGVEYEEPY ILPCVLNSADYVYPSTLLPPAGCMW W7K6I2 (7S,10S,13S)-N-cyclopentyl-10-[2-(morpholin-4-yl)ethyl]-9,12-dioxo-13-(2-oxopyrrolidin-1-yl)-2-oxa-8,11-diazabicyclo[13.3.1]nonadeca-1(19),15,17-triene-7-carboxamide 0.000597745 6 YRE water 1.8015e-05 218 HOH singleParticle particle 0.5 7.5 20.0 Tris 100.0 KCl KCl 5.0 MgCl2 MgCl2 1.0 DTT 2.0 DMF Quantifoil R1.2/1.3 GOLD 300 CARBON HOLEY PLASMA CLEANING 30 OTHER ETHANE 100 279 FEI VITROBOT MARK IV FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 100.0 2.7 1.3 1.8 105000.0 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN GIF Bioquantum 20 GATAN K3 BIOQUANTUM (6k x 4k) 11520 8184 1 29343 1.5 66.0 1 657066 C2 BACK PROJECTION 2.18 FSC 0.143 CUT-OFF RELION 3.0 305581 MAXIMUM LIKELIHOOD cryoSPARC MAXIMUM LIKELIHOOD 3 cryoSPARC 2.8 6MUW PDB experimental model RIGID BODY FIT REAL 21.440000000000001 emd_29764_msk_1.map emd_29764_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 384 384 384 0 0 0 384 384 384 317.952 317.952 317.952 90.0 90.0 90.0 X Y Z -0.02293178 0.06877464 0.00025032234 0.003435759 0.828 0.828 0.828 AUTHOR ::::EMDATABANK.org::::EMD-29764:::: emd_29764_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 384 384 384 0 0 0 384 384 384 317.952 317.952 317.952 90.0 90.0 90.0 X Y Z -0.020463215 0.066092685 0.000250152 0.003435649 0.828 0.828 0.828 AUTHOR ::::EMDATABANK.org::::EMD-29764::::