2024-11-13 REL RCSB RCSB RCSB 2023-01-20 2024-01-24 2024-01-24 2024-11-13 National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) GM118070 United States National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) AI149210 United States National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) GM128680 United States Eiler DR Wimberly BT Bilodeau DY Rissland OS Kieft JS Giardia lamblia, Ribosome structure, Translation, parasite, RIBOSOME Eiler DR Wimberly BT Bilodeau DY Taliaferro JM Reigan P Rissland OS Kieft JS Structure UK 32 400 2024 38242118 doi:10.1016/j.str.2023.12.015 0969-2126 2005 STRUE6 8fvy FULLOVERLAP 60S ribosomal subunit of the 80S Giardia intestinalis assemblage A ribosome 60S ribosomal subunit of the 80S Giardia intestinalis assemblage A ribosome 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 Giardia intestinalis assemblage A 18S rRNA Giardia intestinalis assemblage A 0.47051681199999995 1 CAUCCGGUCGAUCCUGCCGGAGCGCGACGCUCUCCCCAAGGACGAAGCCAUGCAUGCCCGCUCACCCGGGACGCGGCGGA CGGCUCAGGACAACGGUUGCACCCCCCGCGGCGGUCCCUGCUAGCCGGACACCGCUGGCAACCCGGCGCCAAGACGUGCG CGCAAGGGCGGGCGCCCGCGGGCGAGCAGCGUGACGCAGCGACGGCCCGCCCGGGCUUCCGGGGCAUCACCCGGUCGGCG CGGUCGCGGCGCGCCGAGGGCCCGACGCCUGGCGGAGAAUCAGGGUUCGACUCCGGAGAGCGGGCCUGCGAGACGGCCCG CACAUCCAAGGACGGCAGCAGGCGCGGAACUUGCCCAAUGCGCGGCGCGCGAGGCAGCGACGGGGAGCGCGCGAGCGAGG CGGGCCCACAGCCCCCGCCGCGGAGCCGAGGGCAAGGUCUGGUGCCAGCAGCCGCGGUAAUUCCAGCUCGGCGAGCGUCG CGCGGCGCUGCUGCAGUUGAAACGCCCGUAGUUGGCCCCCCGCCGCCACGAGGAAACGGGAGCGCUCCAGGCAGGCCCGU UGGACCCGCCGCGUGGGACCGCGCAGCGGGCGCGGCGCGCCGCGGCAGCCCCGAGGAGAGCGGGCGGGGGCACCGGUACC GGCCGGGGACGGGUGAAACAGGAUGAUCCCGCCGAGACCGCCGGCCGCGCAGGCGCCUGCCAAGACCGCCUCUGUCAAUC AAGGGCGAAGGCCGGGGGCUAGAAGGCGAUCAGACACCACCGUAUUCCCGGCCGUAAACGGUGCCGCCCCGCGGCCGGCG CGCGCGUCCCGCCGGCCGCCCAGGGAAACCGGGAGGCUCCGGGCUCUGGGGGGAGUAUGGCCGCAAGGCUGAAACUUGAA GGCAUUGACGGAGGGGUACCACCAGACGUGGAGUCUGCGGCUCAAUCUGACCCAACGCGCGCACCUCACCAGGCCCGGAC GCGCGGAGGACCGACAGCCGGGCGCGCUUUCGCGAUCGCGCGGGCGGUGGUGCAUGGCCGCUCCCAGCCCGUGGCGCGAG CCGUCUGCUCCAUUGCGACAACGAGCGAGACCCCGGCCGCGGGCGCCGCGGGACGGCCCGCGCGAGCGGGAGGACGGCGG GGCGAUAGCAGGUCUGUGAUGCCCUCAGACGCCCUGGGCCGCACGCGCGCUACACUGGCGGGGCCAGCCGGCGCCCGCGA GGACGCGCGGAGCCCCCGCCGUGGCCGGGACCGCGGGCUGGAACGCCCCCGCGCACCAGGAAUGUCUUGUAGGCGCCCGC CCCCACCGCGCGCCGGACGCGUCCCUGCCCCUUGUACACACCGCCCGUCGCUCCUACCGACUGGGCGCGGCGGCGAGCGC CCCGGACGCGCGAAGGGCCGCGAGCCCCCGCGCCUGGAGGAAGGAGAAGUCGUAACAAGGUAUCCGUAGGUGAACCUGCG GAUGGAUCCCU CP110916.1 40S ribosomal protein SA Giardia intestinalis assemblage A 0.028101802999999998 1 LEVO MSTEKTSQASKEYQLKEADVKKMLVATTHLGVRNIDRRMQFYIFDRQKDGTFVFNLQKVWAKIVFAARILVTIDDPAEIA VVANRPDAQRAILKFCKYTHATAFPGRFIPGNFTNRMNPNYCEPRLLLVNDPVVDRQAILEASYVNIPTISLCNSDANLK FIDVAIPCNNKTPMSIGLIYWLLAREVLRLKGSISRTEEWDVKPDLFVALPEEIPDEEESEDFYDDDEEEDEEFSAGNGN LFDEY A8BE86 40S ribosomal protein S3a Giardia intestinalis assemblage A 0.028413148 1 LEVO MAIGGNKTGKKKITQRKNPDPYLKKEWYPVIAPAHFKSRHIGQTPVTKTAGLRVATDVINHRVYEVNLGDLNPGAEDLNG NTKFYLQTQLVSDGKCLTNFHGMDITRHKYGSLFRKGCDCIDVFMDIPTTDGYLLRVFVIAFTDRFRFQRRKNCHVKGRV IRMMRAGIYETLHNELGKVSIPVLVTKLSNFEVNAKLTEALQKITMCRDVMIRRVKVVKRPRNTMELLSTMHDSNQVRNL AEGQSIQQ A8BS79 Ribosomal protein S2 Giardia intestinalis assemblage A 0.026765695 1 LEVO MQAESAPRPERPERGERGPRQMEEEEWHPSTKLGRLVKAGKIESLYDIFKYSLPIKETEIIDYFFPKSELAEEVCNIMSV QKQTTAGQRTRFRAHVIVGNRDGFIGYGAGVSKEVANAIKKAAKNARLNIVPVRRGFWGGKLGDPHTVSSKLSGKCGSVR VRLIPAPRGAGIVASPTVAKVLEFAGVSDVFTRQSGHSRTLMNSVGAVYNALKSSYSILTPDLWKKEQLDHVQDIRTMSL AD A8BMZ1 Ribosomal protein S3 Giardia intestinalis assemblage A 0.024779148 1 LEVO MPRIVRRDEENVYYSKYLNDCIMEAELHEFFSRELVDAGYASCSLCRTIDSICVIIQCAEPEVVMGDNHYRLHKIEYLLA GRFMCDPKNFNIWVDKIIKRGLSAEIMVDNLRAKLEEAMPIRRAAYSIIRTAMRAGAAGCEVIVAGKLRAQRARANKFKE GCLISTGHPKRIFLAEATRHIKMRQGVIGVKVRIYNPNIRGAVMPDKIEIGAFSRQK A8B8Z2 40S ribosomal protein S4 Giardia intestinalis assemblage A 0.030464780999999996 1 LEVO MARGVRKHLKRLNAPKHWLLDKMGGIWAPRPTNGPHGLRECIPLILILRNRLHYANTYAETSMILQDKNVLIDGKPRTDP TFPVGFMDVFEIPKVHKTFRVLYDVKGRFTLVPIQSNEAGFKLCRVQKIFLGDKGMPYLSTHDARTIRFPHPDIKTNDTI KINLKTGKIDEWYKFDIGKIVMVTGGRNCGRIGTIQAIDKHMGSYTMIRMKDTEGTEFLTRLCNVFVIGNDSPAVAIPTT KGIRPDIIKNRELRLRSIAKRGGGASYE A8BFE3 SSU ribosomal protein S7P (Fragment) Giardia intestinalis assemblage A 0.021058275 1 LEVO MSLEVALFNKWPLTDVKCQDESLEAYISIDNHSFVPHSAGRWSAKRFRKAKCPVVERLTNSLMMHGRNSGKKLMAMKTVG EAFELINLYTGKNPVQVLVDAVANSGPREDSCRIGKGGQVRRQSVDVSPLRRVNIGIYNIATGARKAAFRKVRPFAECLA EEIMNAAAGADKSYAISQRNSVERIAVSNR V6T8P6 40S ribosomal protein S6 Giardia intestinalis assemblage A 0.028084123 1 LEVO MPKGSFCKVNISNPVTGANKSLMIEDFRKSQTIHGLRMASEFDGAALGEEYAGCTFRITGGNDAQGFPMYQGVLKSQRAR LLLRQGAKCYLHRRNGERKRKSIRGCIVGPDLHALSVVLVDAGDKTLPGLTDVVVPKRLVPKRASKIRRLFGLPTTKVDP KDQMLVCELIKELGHEVTLKNGEKKLKYPKVQRVVTDEKYARKQRVIAEKKEIMRKSLQQLEEYKALLSRMGKQHNIRIY KPAKRTVE A8B6L8 40S ribosomal protein S7 Giardia intestinalis assemblage A 0.023072963 1 LEVO MNFHLTRSIPSMTFPAQRKIRKPFEKLSELEKQVAGTLLKLEDDPDLREMGLGTLYISSVKEIAVDGDKKAAVVYVPYPM LQSFQKNSEALILKLEKNHSGHRFIIVANRTIMKNAYVFTGKKSIRRPRSRTMTSVYNCILDDICYPIHVIGKRTLYPAG SNPRLQVVLPKAVYNEVSERTKTYSAVYKALTERDTEFIFM V6TBA3 40S ribosomal protein S8 Giardia intestinalis assemblage A 0.019451555 1 LEVO MGITHDKMYKRSKTGAVQGKWHKKRKYNLGRQPANTKLIVKVTSKKNEGQKISTIRCRGGNIKRRALRLSHGSFAWGSAD ISHKARILQVVYNSTSNELVRTNTLVKGCVVQIDSAPFKSALSNDTLDKEILDQIRGDHILARISSRPGQVGTADGYILE GPELLFYQKKLAPK A8B252 Ribosomal protein S9 Giardia intestinalis assemblage A 0.021699322 1 LEVO MPRISRHRNSSKTYSTPKKPFTKPRLDAELKLCGEYGLKCKREIYRARYMLAKIRRTARNLLTLDENDIKRRFEGAALLR RLHMLGILDEEKDQLDYVLGLRIEDIFKRRLQSVIVESKLAKSVHHARNMIKARHISVGGQIVNIPSYMVRISNTSRVAI ADTSSLAPNGKPGRTKRAAARRQSSGDNE A8BKS8 Ribosomal protein S10B Giardia intestinalis assemblage A 0.015406633 1 LEVO MVHIPKAVYKAVYAHLYENASLALKEYWRVGNVPGITYVDENGKLCNPTYLHVNCIMQSLESRGVVKDTFAWRHHYYLLT EKGEQFIRKELDLTDDVLPTPYSKPSIKPPQYAQCFSSKGKPDRAPQPKPDEAK A8BRX3 SSU ribosomal protein S17P Giardia intestinalis assemblage A 0.023160898 1 LEVO MSATKDKQQSNAGAKVGGRHPLRPDPDRERRALERAETLRKAAYEMAENQHERAYHKQSQIFQGRFLRKDNARCLRFYKS IGMGYHTPITAINGTYIDKKCPFTGNVSIRGRILRGVVHSAKMQRSIIVRRDYLHFVQKYKRYERRHKHVAAHLSPCFRV KEGDIVTIGECRPLSKTIRFNVIKVEPVSEAAKKRFSPF V6TF82 Ribosomal protein S13 Giardia intestinalis assemblage A 0.017627873 1 LEVO MGRMHSKGKGISRSAIPYTRAPAPWNKYTPEDVCEQICKLAKKGTPPSRIGLILRDQFAIGQVKNVTGSKIVRILKAKGL APEIPEDLYCMIKKAVAIRKHLERSRRDKDSKFRLILVESRIHRLARYYRQARRLPPTFRYKSDQAAALLATYA A8BE02 Ribosomal protein S14 Giardia intestinalis assemblage A 0.015755995000000002 1 LEVO MSRKVTYAPENLPAKNNNSEAFAVCHIYAGKNDTFIHVTDLSGRETIGRVSGGMKVKRHCDEPSAYAAMQATQDLIEIIT DRGITAVHIKIRADGGTGKRVYGQGGSAAIRALVRGGIKIGRIEDSTPIPTDRTRHKGGRRGRRL E2RU83 Ribosomal protein S15 Giardia intestinalis assemblage A 0.016728101999999998 1 LEVO MTDQVKTRRRGLAQPNFRGVEVEKLATMKITDILPKLNARCRRRIGKHGLSMKHLRFVNKLRLRRAAQPSQKPKIVRTHL RDMIIFPEMIGMTVSVYNGRQFIPVEIKPPMVGRALREYSMSYKIVSHGKVGIGATRSSKFVPLR A8BBP3 Ribosomal protein S16 Giardia intestinalis assemblage A 0.017634584 1 LEVO MAKGNRRDLLERNDIEVRERDKYTVHTLGKKKNSVAVAFVKAGKGDILVNNVPLALVRPEILRTKVSEPIMILGESLFKG LDMNIKVAGGGHVSQIYAVRQAISRGVLASVKDEAARSELRAKLVSYDRQLVVSDPRRCEAKKFGGRGARARRQKSYR A8BKC6 Ribosomal protein S17 Giardia intestinalis assemblage A 0.015757351 1 LEVO MGKVRTKTIKRAARKIVENNYESLKPKDFQNNKAICSKRNVAIIPSKRLRNKVAGYVTTLMNRVVKGPVHGISLRLQEEE RERRDNYAPKKSEFDVENITVSGATQQMIDSIGFKCMSTSLKVIDPTMRKRARDTRE A8BRG5 Ribosomal protein S18 Giardia intestinalis assemblage A 0.017510338 1 LEVO MTTIVQPNDYRDLLRMFNTNIQGKVVLECALVGIKGIGRRFANVALKKANIDVHKRAGELTAAEEDALMKVLEDPLSHGI PAWMLNRNNDFESGKDMHILVNTIASTHRADLERLRKTRCERGVRHHHNLKVRGQHTKSTGRRGHVVGVQRKKK A8BZ58 SSU ribosomal protein S19E (Fragment) Giardia intestinalis assemblage A 0.017816758000000002 1 LEVO VRQRIHIKLKYWSINQLLGMSSVTRVPADVFINSFAAHLKNRGIIKCPAFTDYVKTGVSRQYAPRDADWFYIKAASVIRH FYISGSHSIGVAGLARKYSSLQKGKTTPHHTKRASCKVIRSIVSQFLGQKLLIAGERGRHISPNGRKMVEDFAEGLQK V6TE85 Ribosomal protein S20 Giardia intestinalis assemblage A 0.014073191999999998 1 LEVO MAESVSTGGVNLADHKDGKDMHQKYTIIVVGKDLKLVERYVKSIVKEGRAFGISGPCRAPVRRLTITTRKSPCGEGTNTW HRFELRMYKRTFWVTCGGNDISTILSKTVVIPGIQVTVEVEEPDNE A8B4G0 40S ribosomal protein S21 Giardia intestinalis assemblage A 0.009686149 1 LEVO MQSDDIGMKNSSGVVVDAYIPRKCSATNRLIGPKDHAAVQLSVARVNDKGKMIENNYVTFAFCGAIRSRGGVDSAFMLLA QEHGLMERL A8B484 SSU ribosomal protein S8P (Fragment) Giardia intestinalis assemblage A 0.014770345999999998 1 LEVO MVRINVLRDALKSICNAQRIGKKQVIVRPSSKVIIEFLQLMQKNGYISDFAVVDNHRSNRIVVNLIGRLNKAGVISPRFD IPANDIEKWVVNLLPSRLFGHIILTTSQGIMDHIEAQHRQIGGKVIGYFY V6TFI0 SSU ribosomal protein S12P Giardia intestinalis assemblage A 0.01589784 1 LEVO MSKTSGLYTARKLRTVRRVNRWADKKYRKAHLGTWLKANPLEGACMARGIVTQKIGISAKQPNSAVRKAVRVQLTKNSKK ITAFVPRDGSITYIDNNDEVLVAGFGRAGRAVGDIPGCRFKVIKVAGIGLLALFLRKREKRAR V6T9I6 Ribosomal protein S24 Giardia intestinalis assemblage A 0.014872646 1 LEVO MPEITVKVRKVLNNPLLQRQQCVVDVLHPGCTYESKEAIKAKVAQQLKVADQKNIVLYGFKTSFGGGHTVGFCNAYQNMD ALMKYEPGFRKIRCGLIEAPKPVSRKQLKNLKNRRLKKRGTEKATVTLGAKK A8B593 40S ribosomal protein S25 Giardia intestinalis assemblage A 0.010121098 1 LEVO MSSKKWTKKAVKEKVDYPTLFADEAAMNEALKFIKNSKCITHTQICERLRVSVALAKRVMRQLVKSGDFAIVSKSSRMTI FKNMTKKE A8B8H7 40S ribosomal protein S26 Giardia intestinalis assemblage A 0.012791022999999999 1 LEVO MPVKRRNNGRSKYNCGHTNIVRCQNCHRCVPKDKVIKRFTIRNIVDNTIADDVLNACVIQGFAIPKLYNKVQYCVSCSIH NHIVRVRSREDRKIRTPPKRFPRNSSQKK A8BQZ7 Ribosomal protein S27 Giardia intestinalis assemblage A 0.014117312 1 LEVO MTPFSRFGEHCQLNINHAVYTLKLQTNPNKFKFKSELRGAKVSMNVDLLYPDPVEEQRKHKLKRLVQGPNSYFLEIKCAG CQDIVVVYSHANTPVFCPGCTSQISIPTGGKCAFTSQVERYRQK A8BJL1 Ribosomal protein S28 Giardia intestinalis assemblage A 0.0073586419999999994 1 LEVO MPEPINARVIEVLGRTSSRGGITQVKVEFMTGEKRQIIRNVIGPVRKDDILVLMESEREARRLR A8B4F3 Ribosomal protein S29A Giardia intestinalis assemblage A 0.01549978 1 LEVO MRSALDTGVAADRIGRPQTFAELRVDKVDDIGTQRHIEHLGPRKLRNLGSCGAEDLDSRVHPSTIFWPTEADNINLASGV PKKGPSMRETEFCTHIAHKRECRICGNYNSVYRKYGLFICRRCFKENAGKIGFVKLH A8B7H6 Ribosomal protein S27a Giardia intestinalis assemblage A 0.015134745 1 LEVO MLVIVRLQDQTLPFELPAGARASQLSNLLSSSGMAFSLHTQGRVLSEAAELNDKMVIDAFVPADGAGKDKKRKKKAHKTP KKIKHEPKKVRLACLKYYTIKGDTAEPTREYCPNCGPGIRIARHADRCHCGRCGFAK A8BNY1 tRNA Giardia intestinalis assemblage A 0.023749050999999997 1 GGGUAAUUGGCGCAGUUGGUUAGCGCGCGGGUCUCAUAAUCCCGAGCUCGUGAGUUCGAUCCGCACAUUCCCCA Ribosomal protein S12 Giardia intestinalis assemblage A 0.014378715 1 LEVO MADTTRENFLKETFKRIHNMDGLVTGHRQVFKYLERKRAKICFLASDCEEKQYADIVECLCKEYKVHLCKKFTRRTLGEL TGQVRCLADSDKIIKVVPASACVIHNFVGMSSGDVDSFLTKLDEQ A8BUG8 40S ribosomal protein S30 Giardia intestinalis assemblage A 0.007932406999999999 1 LEVO MARAHGGLTSAGKVRKCTPKKEKKEKPRPPRGRAYKRLLYNKNFVDDTLIHNGRRLGPNNLLIRQKLGF A0A644F843 MAGNESIUM ION 2.4305e-05 23 MG emetine 0.000480639 1 YAT ZINC ION 6.5409e-05 1 ZN water 1.8015e-05 743 HOH singleParticle particle 7.4 ETHANE TFS KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 0.5 1.9000000000000001 GATAN K3 (6k x 4k) 72.26 1 5XY3 2.94 FSC 0.143 CUT-OFF 289618 MAXIMUM LIKELIHOOD MAXIMUM LIKELIHOOD emd_29495_additional_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 450 450 450 0 0 0 450 450 450 369.495 369.495 369.495 90.0 90.0 90.0 Z Y X -11.311709 26.660366 -0.0018938165 1.0456502 0.8211 0.8211 0.8211 AUTHOR ::::EMDATABANK.org::::EMD-29495:::: Main map for refinement of the 40S subunit. emd_29495_additional_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 450 450 450 0 0 0 450 450 450 369.495 369.495 369.495 90.0 90.0 90.0 X Y Z -1.0292923 2.4640195 -0.010388785 0.05119039 0.8211 0.8211 0.8211 AUTHOR ::::EMDATABANK.org::::EMD-29495:::: Main map for building the head of the 40S subunit. emd_29495_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 702 702 702 0 0 0 702 702 702 576.4122 576.4122 576.4122 90.0 90.0 90.0 X Y Z -0.74936414 1.6125767 -0.001150712 0.08616035 0.82109994 0.82109994 0.82109994 AUTHOR ::::EMDATABANK.org::::EMD-29495:::: Half map of focused refinement P191_J466_Focused_Head_2p94.mrc emd_29495_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 702 702 702 0 0 0 702 702 702 576.4122 576.4122 576.4122 90.0 90.0 90.0 X Y Z -0.77348965 1.6168478 -0.0011536543 0.08616905 0.82109994 0.82109994 0.82109994 AUTHOR ::::EMDATABANK.org::::EMD-29495:::: Half map of focused refinement P191_J466_Focused_Head_2p94.mrc