2024-05-01 REL RCSB RCSB RCSB 2023-01-19 2023-09-06 2023-09-06 2024-05-01 National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) R01AI150524 United States Ito F Alvarez-Cabrera AL Zhou ZH Chen XS virus-host protein complex, ANTIVIRAL PROTEIN Ito F Alvarez-Cabrera AL Kim K Zhou ZH Chen XS Nat Commun UK 14 5241 5241 2023 37640699 doi:10.1038/s41467-023-40955-x 2041-1723 EMD-29488 other EM volume EMD-29489 other EM volume Hetero-heptameric complex of HIV-1 Vif and human APOBEC3H, CBF-beta, ELOB, ELOC, CUL5, and RBX2 Hetero-heptameric complex of HIV-1 Vif and human APOBEC3H, CBF-beta, ELOB, ELOC, CUL5, and RBX2 0 1 2 3 4 5 6 7 Homo sapiens Core-binding factor subunit beta Homo sapiens Escherichia coli LEVO MPRVVPDQRS KFENEEFFRK LSRECEIKYT GFRDRPHEER QARFQNACRD GRSEIAFVAT GTNLSLQFFP ASWQGEQRQT PSREYVDLER EAGKVYLKAP MILNGVCVIW KGWIDLQRLD GMGCLEFDEE RAQQEDALAQ QAFEEARRRT REFEDRD Q13951 Virion infectivity factor Human immunodeficiency virus 1 pNL4-3 Escherichia coli LEVO GPMENRWQVMIV WQVDRMRINT WKRLVKHHMY ISRKAKDWFY RHHYESTHPK ISSEVHIPLG DAKLVITTYW GLHTGERDWH LGQGVSIEWR KKRYSTQVDP DLADQLIHLH YFDCFSESAI RNTILGRIVS PRCEYQAGHN KVGSLQYLAL AALIKPKQIK PPLPSVRKLT EDRWNK P12504 Elongin-B Homo sapiens Escherichia coli LEVO MDVFLMIRRH KTTIFTDAKE SSTVFELKRI VEGILKRPPD EQRLYKDDQL LDDGKTLGEC GFTSQTARPQ APATVGLAFR ADDTFEALCI EPFSSPPELP DV Q15370 Elongin-C Homo sapiens Escherichia coli LEVO MYVKLISSDG HEFIVKREHA LTSGTIKAML SGPGQFAENE TNEVNFREIP SHVLSKVCMY FTYKVRYTNS STEIPEFPIA PEIALELLMA ANFLDC Q15369 Cullin-5 Homo sapiens Escherichia coli LEVO SLQFEDKWD FMRPIVLKLL RQESVTKQQW FDLFSDVHAV CLWDDKGPAK IHQALKEDIL EFIKQAQARV LSHQDDTALL KAYIVEWRKF FTQCDILPKP FCQLEITLMG KQGSNKKSNV EDSIVRKLML DTWNESIFSN IKNRLQDSAM KLVHAERLGE AFDSQLVIGV RESYVNLCSN PEDKLQIYRD NFEKAYLDST ERFYRTQAPS YLQQNGVQNY MKYADAKLKE EEKRALRYLE TRRECNSVEA LMECCVNALV TSFKETILAE CQGMIKRNET EKLHLMFSLM DKVPNGIEPM LKDLEEHIIS AGLADMVAAA ETITTDSEKY VEQLLTLFNR FSKLVKEAFQ DDPRFLTARD KAYKAVVNDA TIFKLELPLK QKGVGLKTQP ESKCPELLAN YCDMLLRKTP LSKKLTSEEI EAKLKEVLLV LKYVQNKDVF MRYHKAHLTR RLILDISADS EIEENMVEWL REVGMPADYV NKLARMFQDI KVSEDLNQAF KEMHKNNKLA LPADSVNIKI LNAGAWSRSS EKVFVSLPTE LEDLIPEVEE FYKKNHSGRK LHWHHLMSNG IITFKNEVGQ YDLEVTTFQL AVLFAWNQRP REKISFENLK LATELPDAEL RRTLWSLVAF PKLKRQVLLY EPQVNSPKDF TEGTLFSVNQ EFSLIKNAKV QKRGKINLIG RLQLTTERMR EEENEGIVQL RILRTQEAII QIMKMRKKIS NAQLQTELVE ILKNMFLPQK KMIKEQIEWL IEHKYIRRDE SDINTFIYMA Q93034 RING-box protein 2 Homo sapiens Escherichia coli LEVO MADVEDGEET CALASHSGSS GSKSGGDKMF SLKKWNAVAM WSWDVECDTC AICRVQVMDA CLRCQAENKQ EDCVVVWGEC NHSFHNCCMS LWVKQNNRCP LCQQDWVVQR IGK Q9UBF6 DNA dC->dU-editing enzyme APOBEC-3H Homo sapiens Escherichia coli LEVO GPGGSGGMALLTAETFR LQFNNKRRLR RPYYPRKALL CYQLTPQNGS TPTRGYFENK KKCHAEICFI NEIKSMGLDE TQCYQVTCYL TWSPCSSCAW ELVDFIQAHD HLNLRIFASR LYYHWCKPQQ DGLRLLCGSQ VPVEVMGFPE FADCWENFVD HEKPLSFNPY KMLEELDKNS RAIKRRLDRI KS Q6NTF7 3.5.4.38 singleParticle particle 0.15 7.5 ETHANE 100 277 FEI VITROBOT MARK IV TFS GLACIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 200 2.0 1.2 3.0 150000.0 FEI FALCON IV (4k x 4k) 1 12546 8.0 40.0 1 5032127 Generated by stochastic gradient descent using ab intio reconstruction in cryoSPARC. 1 5.14 FSC 0.143 CUT-OFF cryoSPARC 98939 MAXIMUM LIKELIHOOD cryoSPARC MAXIMUM LIKELIHOOD cryoSPARC 4 cryoSPARC emd_29490_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 512 512 512 0 0 0 512 512 512 471.04 471.04 471.04 90.0 90.0 90.0 X Y Z -0.13213424 0.2703921 0.00005221692 0.008457198 0.92 0.92 0.92 AUTHOR ::::EMDATABANK.org::::EMD-29490:::: emd_29490_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 512 512 512 0 0 0 512 512 512 471.04 471.04 471.04 90.0 90.0 90.0 X Y Z -0.14081848 0.28125736 0.00005366277 0.008482099 0.92 0.92 0.92 AUTHOR ::::EMDATABANK.org::::EMD-29490::::