<emd emdb_id="EMD-2939" version="3.0.1.1" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v3/v3_0_1_1/emdb_relaxed.xsd">
    <admin>
        <current_status>
            <code>REL</code>
            <processing_site>PDBe</processing_site>
        </current_status>
        <sites>
            <deposition>PDBe</deposition>
            <last_processing>PDBe</last_processing>
        </sites>
        <key_dates>
            <deposition>2015-03-17</deposition>
            <header_release>2015-04-01</header_release>
            <map_release>2015-09-23</map_release>
            <update>2016-02-17</update>
        </key_dates>
        <title>Electron tomogram of Pseudomonas moraviensis stanleyae containing selenium nanoparticles</title>
        <authors_list>
            <author>Ni TW</author>
            <author>Staicu L</author>
            <author>Nemeth RS</author>
            <author>Schwartz C</author>
            <author>Crawford D</author>
            <author>Seligman JD</author>
            <author>Hunter WJ</author>
            <author>Pilon-Smits E</author>
            <author>Ackerson CJ</author>
        </authors_list>
        <keywords>Pseudomonas moraviensis stanleyae, selenium nanoparticle, electron tomography</keywords>
    </admin>
    <crossreferences>
        <citation_list>
            <primary_citation>
                <journal_citation published="true">
                    <author order="1">Ni TW</author>
                    <author order="2">Staicu LC</author>
                    <author order="3">Nemeth RS</author>
                    <author order="4">Schwartz CL</author>
                    <author order="5">Crawford D</author>
                    <author order="6">Seligman JD</author>
                    <author order="7">Hunter WJ</author>
                    <author order="8">Pilon-Smits EA</author>
                    <author order="9">Ackerson CJ</author>
                    <title>Progress toward clonable inorganic nanoparticles.</title>
                    <journal>Nanoscale</journal>
                    <volume>7</volume>
                    <first_page>17320</first_page>
                    <last_page>1737</last_page>
                    <year>2015</year>
                    <external_references type="PUBMED">26350616</external_references>
                    <external_references type="DOI">doi:10.1039/c5nr04097c</external_references>
                </journal_citation>
            </primary_citation>
        </citation_list>
    </crossreferences>
    <sample>
        <name>Selenium Nanoparticles contained within cells of Pseudomonas moraviensis stanleyae</name>
        <supramolecule_list>
            <sample_supramolecule supramolecule_id="1000">
                <name>Selenium Nanoparticles contained within cells of Pseudomonas moraviensis stanleyae</name>
                <details>Cells were grown in 10 mM HNaSeO3/LB for 36 hours. Medium was replaced every 8 hours.</details>
                <number_unique_components>1</number_unique_components>
            </sample_supramolecule>
        </supramolecule_list>
        <macromolecule_list>
            <em_label macromolecule_id="1">
                <name>Pseudomonas moraviensis stanleyae</name>
                <details>~80 nm selenium nanoparticles were made inside of Pseudomonas moraviensis stanleyae cells. Showing a potential clonable tag capable of making inorganic nanoparticles.</details>
            </em_label>
        </macromolecule_list>
    </sample>
    <structure_determination_list>
        <structure_determination structure_determination_id="1">
            <method>tomography</method>
            <aggregation_state>cell</aggregation_state>
            <specimen_preparation_list>
                <tomography_preparation preparation_id="1">
                    <buffer>
                        <ph>7.4</ph>
                        <details>20 mM Tris, 2% glutaraldehyde, 2.5% formaldehyde</details>
                    </buffer>
                    <grid>
                        <details>Formvar coated copper slot grid</details>
                    </grid>
                    <vitrification>
                        <cryogen_name>NONE</cryogen_name>
                        <instrument>OTHER</instrument>
                    </vitrification>
                </tomography_preparation>
            </specimen_preparation_list>
            <microscopy_list>
                <tomography_microscopy microscopy_id="1">
                    <microscope>FEI TECNAI F30</microscope>
                    <illumination_mode>FLOOD BEAM</illumination_mode>
                    <imaging_mode>BRIGHT FIELD</imaging_mode>
                    <electron_source>FIELD EMISSION GUN</electron_source>
                    <acceleration_voltage units="kV">300</acceleration_voltage>
                    <specimen_holder_model>GATAN LIQUID NITROGEN</specimen_holder_model>
                    <date>2014-04-12</date>
                    <image_recording_list>
                        <image_recording>
                            <film_or_detector_model category="CCD">GATAN ULTRASCAN 4000 (4k x 4k)</film_or_detector_model>
                            <number_real_images>120</number_real_images>
                        </image_recording>
                    </image_recording_list>
                    <tilt_series>
                        <axis1>
                            <min_angle units="deg">-60</min_angle>
                            <max_angle units="deg">60</max_angle>
                            <angle_increment units="deg">1</angle_increment>
                        </axis1>
                    </tilt_series>
                </tomography_microscopy>
            </microscopy_list>
            <tomography_processing image_processing_id="1">
                <final_reconstruction>
                    <software_list>
                        <software>
                            <name>Etomo</name>
                        </software>
                    </software_list>
                    <number_images_used>120</number_images_used>
                </final_reconstruction>
            </tomography_processing>
        </structure_determination>
    </structure_determination_list>
    <map format="CCP4" size_kbytes="283497">
        <file>emd_2939.map.gz</file>
        <symmetry>
            <space_group>1</space_group>
        </symmetry>
        <data_type>IMAGE STORED AS SIGNED BYTE</data_type>
        <dimensions>
            <col>1228</col>
            <row>1200</row>
            <sec>197</sec>
        </dimensions>
        <origin>
            <col>-21</col>
            <row>-44</row>
            <sec>14</sec>
        </origin>
        <spacing>
            <x>1200</x>
            <y>1228</y>
            <z>197</z>
        </spacing>
        <cell>
            <a units="&#8491;">111748.0</a>
            <b units="&#8491;">109200.0</b>
            <c units="&#8491;">17927.0</c>
            <alpha units="deg">90.0</alpha>
            <beta units="deg">90.0</beta>
            <gamma units="deg">90.0</gamma>
        </cell>
        <axis_order>
            <fast>X</fast>
            <medium>Y</medium>
            <slow>Z</slow>
        </axis_order>
        <statistics>
            <minimum>-128.0</minimum>
            <maximum>127.0</maximum>
            <average>9.528561590000001</average>
            <std>31.384305950000002</std>
        </statistics>
        <pixel_spacing>
            <x units="&#8491;">91.0</x>
            <y units="&#8491;">91.0</y>
            <z units="&#8491;">91.0</z>
        </pixel_spacing>
        <annotation_details>Reconstruction of Pseudomonas moraviensis stanleyae containing selenium nanoparticles</annotation_details>
        <details>::::EMDATABANK.org::::EMD-2939::::</details>
    </map>
</emd>