REL PDBe PDBe PDBe 2015-03-15 2015-04-01 2015-05-20 2015-05-20 Electron cryo-microscopy structure of PB1-p62 type T filaments Ciuffa R Lamark T Tarafder A Guesdon A Rybina S Hagen WJH Johansen T Sachse C Selective autophagy, autophagy receptor, autophagy scaffold, p62/SQSTM1, single-particle helical reconstruction Ciuffa R Lamark T Tarafder AK Guesdon A Rybina S Hagen WJ Johansen T Sachse C The Selective Autophagy Receptor p62 Forms a Flexible Filamentous Helical Scaffold. CELL REPORTS 11 748 758 2015 25921531 doi:10.1016/j.celrep.2015.03.062 4uf9 FULLOVERLAP PB1(1-122) domain of p62/Sqstm1 PB1(1-122) domain of p62/Sqstm1
Helical polymer
Helical 1 0.0137 0.0137 Theoretical weight of construct Sequestosome-1 Homo sapiens Human 0.0137 0.0137 Helical true Escherichia coli BL21 pOPTM-p62-PB1 Q13501 GO:0000407 GO:0000422 GO:0000932 GO:0000932 GO:0001934 GO:0002376 GO:0004674 GO:0005080 GO:0005515 GO:0005515 GO:0005515 GO:0005515 GO:0005515 GO:0005515 GO:0005515 GO:0005515 GO:0005515 GO:0005515 GO:0005515 GO:0005515 GO:0005515 GO:0005515 GO:0005515 GO:0005515 GO:0005515 GO:0005515 GO:0005515 GO:0005515 GO:0005515 GO:0005515 GO:0005515 GO:0005515 GO:0005515 GO:0005515 GO:0005515 GO:0005515 GO:0005515 GO:0005515 GO:0005515 GO:0005515 GO:0005515 GO:0005515 GO:0005515 GO:0005515 GO:0005515 GO:0005515 GO:0005515 GO:0005515 GO:0005515 GO:0005515 GO:0005515 GO:0005515 GO:0005515 GO:0005515 GO:0005515 GO:0005515 GO:0005515 GO:0005515 GO:0005515 GO:0005515 GO:0005515 GO:0005515 GO:0005515 GO:0005515 GO:0005515 GO:0005515 GO:0005515 GO:0005515 GO:0005515 GO:0005515 GO:0005515 GO:0005515 GO:0005515 GO:0005515 GO:0005515 GO:0005515 GO:0005515 GO:0005634 GO:0005634 GO:0005654 GO:0005737 GO:0005737 GO:0005737 GO:0005764 GO:0005764 GO:0005768 GO:0005770 GO:0005776 GO:0005776 GO:0005776 GO:0005783 GO:0005783 GO:0005829 GO:0005829 GO:0005829 GO:0005829 GO:0005829 GO:0005829 GO:0005829 GO:0005829 GO:0005829 GO:0005829 GO:0006468 GO:0006511 GO:0006914 GO:0006914 GO:0006914 GO:0006915 GO:0006950 GO:0008104 GO:0008270 GO:0010821 GO:0016197 GO:0016234 GO:0016235 GO:0016235 GO:0016236 GO:0016239 GO:0016605 GO:0019901 GO:0030154 GO:0030971 GO:0031410 GO:0035556 GO:0042169 GO:0042802 GO:0042802 GO:0042802 GO:0042802 GO:0042802 GO:0042803 GO:0043065 GO:0043066 GO:0043122 GO:0043130 GO:0045944 GO:0046578 GO:0046872 GO:0048011 GO:0048011 GO:0051291 GO:0070062 GO:0070530 GO:0097190 GO:0098779 GO:1903146 IPR000270 IPR009060 IPR015940 IPR000433 helical helicalArray 0.25 7.5
50 mM Tris pH 7.5, 100 mM NaCl, DTT 4 mM
glow-discharged C-flat 1.2/1.3 and 200 mesh Quantifoil multi-A grids
 ETHANE 77 HOMEMADE PLUNGER Backside blotting FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 120 2.7 1.5 3.5 59000.0 FEI TITAN KRIOS AUTOGRID HOLDER 2012-10-09 GATAN ULTRASCAN 4000 (4k x 4k) 443 10
All of the image processing was carried using the SPRING package.
10.09 26.71 C1 OTHER 10.3 OTHER SPRING
CTFFIND, convolution images, Wiener filter reconstruction
SPIDER
 emd_2937.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 130 130 290 -64 -64 -144 130 130 290 178.36 178.36 397.88 90.0 90.0 90.0 X Y Z -2.68769741 5.73583364 -0.00000001 0.99999988 1.372 1.372 1.372 1.5 AUTHOR 3D reconstruction of PB1(1-122) type T
::::EMDATABANK.org::::EMD-2937::::
 2KKC RIGID BODY FIT Chimera
A homology model was built using
REAL
emd_2937.png