<emd xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" emdb_id="EMD-2932" version="3.0.1.1" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v3/v3_0_1_1/emdb_relaxed.xsd">
   <admin>
      <current_status>
         <code>REL</code>
         <processing_site>PDBe</processing_site>
      </current_status>
      <sites>
         <deposition>PDBe</deposition>
         <last_processing>PDBe</last_processing>
      </sites>
      <key_dates>
         <deposition>2015-03-13</deposition>
         <header_release>2015-05-06</header_release>
         <map_release>2016-04-13</map_release>
         <update>2016-04-13</update>
      </key_dates>
      <title>Cryo-EM single particle reconstruction of an empty particle of Rosellinia necatrix megabirnavirus 1</title>
      <authors_list>
         <author>Miyazaki N</author>
         <author>Salaipeth L</author>
         <author>Kanematsu S</author>
         <author>Suzuki N</author>
      </authors_list>
      <keywords>Virus, fungal virus</keywords>
   </admin>
   <crossreferences>
      <citation_list>
         <primary_citation>
            <journal_citation published="false">
               <author order="1">Miyazaki N</author>
               <author order="2">Salaipeth L</author>
               <author order="3">Kanematsu S</author>
               <author order="4">Iwasaki K</author>
               <author order="5">Suzuki N</author>
               <title>Megabirnavirus structure reveals a putative 120-subunit capsid formed by asymmetric dimers with distinctive large protrusions</title>
               <journal>To Be Published</journal>
            </journal_citation>
         </primary_citation>
      </citation_list>
   </crossreferences>
   <sample>
      <name>Rosellinia necatrix megabirnavirus 1</name>
      <supramolecule_list>
         <sample_supramolecule supramolecule_id="1000">
            <name>Rosellinia necatrix megabirnavirus 1</name>
            <oligomeric_state>120 subunits</oligomeric_state>
            <number_unique_components>1</number_unique_components>
            <molecular_weight>
               <experimental units="MDa">16.2</experimental>
               <theoretical units="MDa">16.2</theoretical>
            </molecular_weight>
         </sample_supramolecule>
         <virus_supramolecule supramolecule_id="1">
            <name synonym="RnMBV1">Rosellinia necatrix megabirnavirus 1</name>
            <sci_species_name ncbi="1285598">Rosellinia necatrix megabirnavirus 1</sci_species_name>
            <natural_host database="NCBI">
               <organism ncbi="77044">Rosellinia necatrix</organism>
               <strain>W779</strain>
               <synonym_organism>FUNGI</synonym_organism>
            </natural_host>
            <host_system database="NCBI">
               </host_system>
            <molecular_weight>
               <theoretical units="MDa">16.2</theoretical>
            </molecular_weight>
            <virus_shell shell_id="1">
               <diameter units="&#8491;">520</diameter>
               <triangulation>1</triangulation>
            </virus_shell>
            <virus_type>VIRION</virus_type>
            <virus_isolate>SPECIES</virus_isolate>
            <virus_enveloped>false</virus_enveloped>
            <virus_empty>true</virus_empty>
            <syn_species_name>RnMBV1</syn_species_name>
         </virus_supramolecule>
      </supramolecule_list>
   </sample>
   <structure_determination_list>
      <structure_determination structure_determination_id="1">
         <method>singleParticle</method>
         <aggregation_state>particle</aggregation_state>
         <specimen_preparation_list>
            <single_particle_preparation preparation_id="1">
               <vitrification>
                  <cryogen_name>ETHANE</cryogen_name>
                  <instrument>FEI VITROBOT MARK III</instrument>
               </vitrification>
            </single_particle_preparation>
         </specimen_preparation_list>
         <microscopy_list>
            <single_particle_microscopy microscopy_id="1">
               <microscope>FEI TITAN KRIOS</microscope>
               <illumination_mode>FLOOD BEAM</illumination_mode>
               <imaging_mode>BRIGHT FIELD</imaging_mode>
               <electron_source>FIELD EMISSION GUN</electron_source>
               <acceleration_voltage units="kV">200</acceleration_voltage>
               <nominal_defocus_min units="&#181;m">0.0017</nominal_defocus_min>
               <nominal_defocus_max units="&#181;m">0.0049</nominal_defocus_max>
               <nominal_magnification>47000.0</nominal_magnification>
               <specimen_holder_model>FEI TITAN KRIOS AUTOGRID HOLDER</specimen_holder_model>
               <date>2011-04-18</date>
               <image_recording_list>
                  <image_recording>
                     <film_or_detector_model category="CCD">GATAN ULTRASCAN 4000 (4k x 4k)</film_or_detector_model>
                     <average_electron_dose_per_image units="e/&#8491;^2">20</average_electron_dose_per_image>
                  </image_recording>
               </image_recording_list>
            </single_particle_microscopy>
         </microscopy_list>
         <singleparticle_processing image_processing_id="1">
            <final_reconstruction>
               <applied_symmetry>
                  <point_group>I</point_group>
               </applied_symmetry>
               <resolution res_type="BY AUTHOR" units="&#8491;">14.9</resolution>
               <resolution_method>OTHER</resolution_method>
               <software_list>
                  <software>
                     <name>EMAN2</name>
                  </software>
               </software_list>
               <number_images_used>1092</number_images_used>
            </final_reconstruction>
         </singleparticle_processing>
      </structure_determination>
   </structure_determination_list>
   <map format="CCP4" size_kbytes="250001">
      <file>emd_2932.map.gz</file>
      <symmetry>
         <space_group>1</space_group>
      </symmetry>
      <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
      <dimensions>
         <col>400</col>
         <row>400</row>
         <sec>400</sec>
      </dimensions>
      <origin>
         <col>-200</col>
         <row>-200</row>
         <sec>-200</sec>
      </origin>
      <spacing>
         <x>400</x>
         <y>400</y>
         <z>400</z>
      </spacing>
      <cell>
         <a units="&#8491;">712.0</a>
         <b units="&#8491;">712.0</b>
         <c units="&#8491;">712.0</c>
         <alpha units="deg">90.0</alpha>
         <beta units="deg">90.0</beta>
         <gamma units="deg">90.0</gamma>
      </cell>
      <axis_order>
         <fast>X</fast>
         <medium>Y</medium>
         <slow>Z</slow>
      </axis_order>
      <statistics>
         <minimum>-1.21073925</minimum>
         <maximum>2.71305585</maximum>
         <average>0.10942675</average>
         <std>0.39004114</std>
      </statistics>
      <pixel_spacing>
         <x units="&#8491;">1.78</x>
         <y units="&#8491;">1.78</y>
         <z units="&#8491;">1.78</z>
      </pixel_spacing>
      <contour_list>
         <contour primary="true">
            <level>0.98</level>
            <source>AUTHOR</source>
         </contour>
      </contour_list>
      <annotation_details>Reconstruction of an empty particle of RnMBV1</annotation_details>
      <details>::::EMDATABANK.org::::EMD-2932::::</details>
   </map>
</emd>