2024-11-13 REL RCSB RCSB RCSB 2022-12-14 2023-02-08 2023-02-08 2024-11-13 Human Frontier Science Program (HFSP) LT000754 France Cryo-EM structure of human voltage-gated sodium channel Nav1.6 Fan X Huang J Yan N Voltage-gated sodium channel, Nav1.6, MEMBRANE PROTEIN Fan X Huang J Jin X Yan N Cryo-EM structure of human voltage-gated sodium channel Na v 1.6. Proc.Natl.Acad.Sci.USA US 120 e2220578120 e2220578120 2023 36696443 doi:10.1073/pnas.2220578120 1091-6490 0040 PNASA6 8fhd FULLOVERLAP Complex of human voltage-gated sodium channel Nav1.6 with auxiliary beta-1 subunit Complex of human voltage-gated sodium channel Nav1.6 with auxiliary beta-1 subunit 0 1 2 Homo sapiens Sodium channel protein type 8 subunit alpha Homo sapiens 0.22552060899999998 1 Homo sapiens LEVO MAARLLAPPGPDSFKPFTPESLANIERRIAESKLKKPPKADGSHREDDEDSKPKPNSDLEAGKSLPFIYGDIPQGLVAVP LEDFDPYYLTQKTFVVLNRGKTLFRFSATPALYILSPFNLIRRIAIKILIHSVFSMIIMCTILTNCVFMTFSNPPDWSKN VEYTFTGIYTFESLVKIIARGFCIDGFTFLRDPWNWLDFSVIMMAYITEFVNLGNVSALRTFRVLRALKTISVIPGLKTI VGALIQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRNKCVVWPINFNESYLENGTKGFDWEEYINNKTNFYTVPGMLE PLLCGNSSDAGQCPEGYQCMKAGRNPNYGYTSFDTFSWAFLALFRLMTQDYWENLYQLTLRAAGKTYMIFFVLVIFVGSF YLVNLILAVVAMAYEEQNQATLEEAEQKEAEFKAMLEQLKKQQEEAQAAAMATSAGTVSEDAIEEEGEEGGGSPRSSSEI SKLSSKSAKERRNRRKKRKQKELSEGEEKGDPEKVFKSESEDGMRRKAFRLPDNRIGRKFSIMNQSLLSIPGSPFLSRHN SKSSIFSFRGPGRFRDPGSENEFADDEHSTVEESEGRRDSLFIPIRARERRSSYSGYSGYSQGSRSSRIFPSLRRSVKRN STVDCNGVVSLIGGPGSHIGGRLLPEATTEVEIKKKGPGSLLVSMDQLASYGRKDRINSIMSVVTNTLVEELEESQRKCP PCWYKFANTFLIWECHPYWIKLKEIVNLIVMDPFVDLAITICIVLNTLFMAMEHHPMTPQFEHVLAVGNLVFTGIFTAEM FLKLIAMDPYYYFQEGWNIFDGFIVSLSLMELSLADVEGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTL VLAIIVFIFAVVGMQLFGKSYKECVCKINQDCELPRWHMHDFFHSFLIVFRVLCGEWIETMWDCMEVAGQAMCLIVFMMV MVIGNLVVLNLFLALLLSSFSADNLAATDDDGEMNNLQISVIRIKKGVAWTKLKVHAFMQAHFKQREADEVKPLDELYEK KANCIANHTGADIHRNGDFQKNGNGTTSGIGSSVEKYIIDEDHMSFINNPNLTVRVPIAVGESDFENLNTEDVSSESDPE GSKDKLDDTSSSEGSTIDIKPEVEEVPVEQPEEYLDPDACFTEGCVQRFKCCQVNIEEGLGKSWWILRKTCFLIVEHNWF ETFIIFMILLSSGALAFEDIYIEQRKTIRTILEYADKVFTYIFILEMLLKWTAYGFVKFFTNAWCWLDFLIVAVSLVSLI ANALGYSELGAIKSLRTLRALRPLRALSRFEGMRVVVNALVGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKYHYCFNET SEIRFEIEDVNNKTECEKLMEGNNTEIRWKNVKINFDNVGAGYLALLQVATFKGWMDIMYAAVDSRKPDEQPKYEDNIYM YIYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKFGGQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPLNKIQGIVFDFVT QQAFDIVIMMLICLNMVTMMVETDTQSKQMENILYWINLVFVIFFTCECVLKMFALRHYYFTIGWNIFDFVVVILSIVGM FLADIIEKYFVSPTLFRVIRLARIGRILRLIKGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIFSIFGMSNFAYVKHEA GIDDMFNFETFGNSMICLFQITTSAGWDGLLLPILNRPPDCSLDKEHPGSGFKGDCGNPSVGIFFFVSYIIISFLIVVNM YIAIILENFSVATEESADPLSEDDFETFYEIWEKFDPDATQFIEYCKLADFADALEHPLRVPKPNTIELIAMDLPMVSGD RIHCLDILFAFTKRVLGDSGELDILRQQMEERFVASNPSKVSYEPITTTLRRKQEEVSAVVLQRAYRGHLARRGFICKKT TSNKLENGGTHREKKESTPSTASLPSYDSVTKPEKEKQQRAEEGRRERAKRQKEVRESKC Q9UQD0 Sodium channel subunit beta-1 Homo sapiens 0.024732115 1 Homo sapiens LEVO MGRLLALVVGAALVSSACGGCVEVDSETEAVYGMTFKILCISCKRRSETNAETFTEWTFRQKGTEEFVKILRYENEVLQL EEDERFEGRVVWNGSRGTKDLQDLSIFITNVTYNHSGDYECHVYRLLFFENYEHNTSVVKKIHIEVVDKANRDMASIVSE IMMYVLIVVLTIWLVAEMIYCYKKIAAATETAAQENASEYLAITSESKENCTGVQVAE Q07699 2-acetamido-2-deoxy-beta-D-glucopyranose 0.000221208 7 NAG CHOLESTEROL HEMISUCCINATE 0.000486726 4 Y01 CHOLESTEROL 0.000386654 1 CLR 1-O-OCTADECYL-SN-GLYCERO-3-PHOSPHOCHOLINE 0.000510708 5 LPE 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE 0.0007871209999999999 3 PCW O-[(R)-{[(2R)-2,3-bis(octadecanoyloxy)propyl]oxy}(hydroxy)phosphoryl]-L-serine 0.000792075 2 P5S (3beta,14beta,17beta,25R)-3-[4-methoxy-3-(methoxymethyl)butoxy]spirost-5-en 0.0005448049999999999 1 9Z9 (5E,17R,20S)-23-amino-20-hydroxy-14,20-dioxo-15,19,21-trioxa-20lambda~5~-phosphatricos-5-en-17-yl hexadecanoate 0.0006618899999999999 1 P3X singleParticle particle 7 7.5
25 mM Tris-HCl (pH 7.5), 150 mM NaCl and 0.02% GDN
 Quantifoil R1.2/1.3 GOLD 300 GLOW DISCHARGE AIR ETHANE 100 10 FEI VITROBOT MARK IV FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 0.01 1.2 1.5 FEI TITAN KRIOS AUTOGRID HOLDER GATAN K2 SUMMIT (4k x 4k) SUPER-RESOLUTION 7676 7420 1-32 1 3168 5.6 50.0 1
Initial 3D reference generated by Ab initio reconstruction
 1 3.1 FSC 0.143 CUT-OFF 74103 RANDOM ASSIGNMENT MAXIMUM LIKELIHOOD 2 emd_29082.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 320 320 320 0 0 0 320 320 320 356.47998 356.47998 356.47998 90.0 90.0 90.0 X Y Z -2.069776 4.038702 -0.002144974 0.09334062 1.114 1.114 1.114 0.6 AUTHOR Cryo-EM structure of human voltage-gated sodium channel Nav1.6 emd_29082_msk_1.map emd_29082_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 320 320 320 0 0 0 320 320 320 356.47998 356.47998 356.47998 90.0 90.0 90.0 X Y Z -0.93410796 2.0868757 0.001642273 0.09820499 1.114 1.114 1.114 AUTHOR Half Map 2 emd_29082_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 320 320 320 0 0 0 320 320 320 356.47998 356.47998 356.47998 90.0 90.0 90.0 X Y Z -1.2222477 2.0357454 0.0016022956 0.09808114 1.114 1.114 1.114 AUTHOR Half Map 1