REL PDBe PDBe PDBe 2015-02-17 2015-03-11 2015-11-11 2016-06-29 Cryo electron tomography of Naip5/Nlrc4 inflammasome Diebolder CA Halff EF Koster AJ Huizinga EG Koning RI NLRs, NAIP5, NLRC4, inflammasome Diebolder CA Halff EF Koster AJ Huizinga EG Koning RI Cryoelectron tomography of the NAIP5/NLRC4 inflammasome: implications for NLR activation STRUCTURE 23 2349 2357 2015 26585513 doi:10.1016/J.STR.2015.10.001 5aj2 FULLOVERLAP NAIP5/NLRC4/FliC-D0L multimer NAIP5/NLRC4/FliC-D0L multimer
NLRC4 is the main compound within the complex
multimer 3 NLR family CARD domain-containing protein 4 Mus musculus mouse multimer true Homo sapiens HEK293E pUPE Q3UP24 Baculoviral IAP repeat-containing protein 5 Mus musculus mouse multimer true Homo sapiens HEK293E pUPE Q9R016 Flagellin Salmonella enterica subsp. enterica serovar Typhimurium multimer true Homo sapiens HEK293E pUPE Q66PQ5 subtomogramAveraging helicalArray 1.2 7.5
100 mM NaCl, 20 mM HEPES, 2mM Benzamidin, 2mM DTT
glow discharged Cu 200 mesh quantifoil
 ETHANE-PROPANE MIXTURE 95 LEICA EM GP 3 seconds blotting FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 200 6.5 7.5 18000.0 FEI TITAN KRIOS AUTOGRID HOLDER GATAN quantum 0.0 50.0 2013-05-21 GATAN ULTRASCAN 4000 (4k x 4k) 67 100
16 single axis tilt series
16. -66 66
filaments were traced by hand along the outer rim, resulting in an initial protomer model.
5.57 30.9 C1 OTHER 40.0 OTHER IMOD, PEET 50
TOMOCTF
 emd_2901.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 100 100 100 -4 0 10 100 100 100 546.3 546.3 546.3 90.0 90.0 90.0 X Y Z 0.0 255.0 16.017105099999998 46.346935270000003 5.463 5.463 5.463 175.0 AUTHOR sub tomogram average of NAIP5/NLRC4 polymer
::::EMDATABANK.org::::EMD-2901::::
 4KXF RIGID BODY FIT SITUS
SITUS collage was used for simultaneous multi fragment refinement of symmetry related NLRC4 monomers. Each NLR constisted of 3 rigid bodies: LRR, NBD-HDI and WHD-HD2. CARD was excluded because it did not follow identical helical symmetry
REAL
emd_2901.png