2024-03-13 REL RCSB RCSB RCSB 2022-11-27 2024-03-13 2024-03-13 2024-03-13 National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) R01 AI127401 United States National Health and Medical Research Council (NHMRC, Australia) APP1196924 Australia Natural Sciences and Engineering Research Council (NSERC, Canada) RGPIN 04345 Canada Cryo-EM structure of the Agrobacterium T-pilus Kreida S Narita A Johnson MD Tocheva EI Das A Jensen GJ Ghosal D VirB/D4 T4SS, Bacterial conjugation, T-pilus, helical filament, PROTEIN FIBRIL Kreida S Narita A Johnson MD Tocheva EI Das A Ghosal D Jensen GJ Cryo-EM structure of the Agrobacterium tumefaciens T4SS-associated T-pilus reveals stoichiometric protein-phospholipid assembly. Structure UK 31 385 394.e4 2023 36870333 doi:10.1016/j.str.2023.02.005 0969-2126 2005 STRUE6 8fai FULLOVERLAP T-pilus T-pilus 0 1 Agrobacterium tumefaciens NT1REB(pJK270) 2.787 VirB2 1 1 Agrobacterium tumefaciens NT1REB(pJK270) Phosphatidylglycerol 16:1/18:1 1 Agrobacterium tumefaciens NT1REB(pJK270) Protein virB2 Agrobacterium tumefaciens NT1REB(pJK270) 0.012326439 15 LEVO MRCFERYRVHLNRLSLSNAVMRMVSGYAPSVVGAMGWSIFSSGPAAAQSAGGGTDPATMVNNICTFILGPFGQSLAVLGI VAIGISWMFGRASLGLVAGVVGGIVIMFGASFLGKTLTGGG P17792 (7Z,19R,22S,25R)-22,25,26-trihydroxy-16,22-dioxo-17,21,23-trioxa-22lambda~5~-phosphahexacos-7-en-19-yl (9Z)-octadec-9-enoate 0.0007469909999999999 15 XL0 helical filament 1 5.5 50.0 MES 2-(N-morpholino)ethanesulfonic acid UltrAuFoil R1.2/1.3 GOLD 300 GLOW DISCHARGE AIR ETHANE-PROPANE 100 295 FEI VITROBOT MARK IV FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 100.0 2.7 0.7000000000000001 2.0 105000.0 GATAN K3 (6k x 4k) 60.0 1 2 13.44 32.62 C1 3.0 FSC 0.143 CUT-OFF RELION 4.0beta2 3543 10934 RELION 4.0beta2
Filaments were manually picked using EMAN2 e2helixboxer and particles were extracted by RELION.
A cylinder generated by relion_helix_toolbox, a program in RELION.
 NOT APPLICABLE RELION 4.0beta2 emd_28957.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 300 300 300 0 0 0 300 300 300 249.6 249.6 249.6 90.0 90.0 90.0 X Y Z -0.041824292 0.06753963 0.00012728001 0.0022377584 0.832 0.832 0.832 0.009 AUTHOR emd_28957_msk_1.map emd_28957_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 300 300 300 0 0 0 300 300 300 249.6 249.6 249.6 90.0 90.0 90.0 X Y Z -0.036634356 0.047068954 0.00006921386 0.0036140585 0.832 0.832 0.832 AUTHOR emd_28957_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 300 300 300 0 0 0 300 300 300 249.6 249.6 249.6 90.0 90.0 90.0 X Y Z -0.035704922 0.04785178 0.00006113921 0.0038234734 0.832 0.832 0.832 AUTHOR