2024-11-13 REL RCSB RCSB RCSB 2022-11-23 2024-05-15 2024-05-15 2024-11-13 Bill & Melinda Gates Foundation OPP1115782/INV-002916 United States National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) A1144462 United States National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) GM129547 United States HIV Env germline targeting BG505_MD64_N332-GT5 SOSIP in complex with V3-glycan polyclonal Fab isolated from immunized BG18HCgl knock-in mice Ozorowski G Torres JL Ward AB mouse antibody, germline targeting, HIV-1, vaccine design, polyclonal, VIRAL PROTEIN-IMMUNE SYSTEM complex Xie Z Lin YC Steichen JM Ozorowski G Kratochvil S Ray R Torres JL Liguori A Kalyuzhniy O Wang X Warner JE Weldon SR Dale GA Kirsch KH Nair U Baboo S Georgeson E Adachi Y Kubitz M Jackson AM Richey ST Volk RM Lee JH Diedrich JK Prum T Falcone S Himansu S Carfi A Yates 3rd JR Paulson JC Sok D Ward AB Schief WR Batista FD mRNA-LNP HIV-1 trimer boosters elicit precursors to broad neutralizing antibodies. Science US 384 eadk0582 eadk0582 2024 38753770 doi:10.1126/science.adk0582 1095-9203 0038 SCIEAS EMD-28945 other EM volume 8f9g FULLOVERLAP HIV Env germline targeting BG505_MD64_N332-GT5 SOSIP in complex with V3-glycan polyclonal Fab isolated from immunized BG18HCgl knock-in mice V3-glycan epitope polyclonal Fab heavy chain HIV Env germline targeting BG505_MD64_N332-GT5 SOSIP in complex with V3-glycan polyclonal Fab isolated from immunized BG18HCgl knock-in mice V3-glycan epitope polyclonal Fab heavy chain 0 1 2 3 4 Mus musculus BG505_MD64_N332-GT5 gp120 synthetic construct 0.054236800999999994 3 Homo sapiens LEVO AENLWVTVYYGVPVWKDAETTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHEDIIS LWDQSLKPCVKLTPLCVTLQCTNYAPKLRSMMRGEIKNCSFNMTTELRDKKQKVYSLFYRLDVVQINENQGNRSNNSNKE YRLINCNTSAITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEV IIRSENITNNAKNILVQLNTPVQINCTRPSNNTVKSIRIGPGQAFYYFGDVLGHVRMAHCNISKATWNETLGKVVKQLRK HFGNNTIIRFAQSSGGDLEVTTHSFNCGGEFFYCNTSGLFNSTWISNTSVQGSNSTGSNDSLILPCWIKQIINMWQRIGQ AMYAPPIQGVIRCVSNITGLILTRDGGSTNSTTETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRVVGRRRRR R BG505_MD64_N332-GT5 gp41 synthetic construct 0.018250541 3 Homo sapiens LEVO AVGIGAVSLGFLGAAGSTMGAASMTLTVQARNLLSGIVQQQSNLLRAPEPQQHLLKDTHWGIKQLQARVLAVEHYLRDQQ LLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALDGTKHHHH HH V3-glycan epitope polyclonal Fab heavy chain Mus musculus 0.010911441000000001 1 LEVO (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) V3-glycan epitope polyclonal Fab light chain Mus musculus 0.008868924 1 LEVO (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) 2-acetamido-2-deoxy-beta-D-glucopyranose 0.000221208 33 NAG singleParticle particle 2.6 7.4 UltrAuFoil R1.2/1.3 GOLD GOLD HOLEY PLASMA CLEANING ETHANE 100 277 FEI VITROBOT MARK IV TFS KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 2.7 0.8 2.5 29000.0 FEI TITAN KRIOS AUTOGRID HOLDER GATAN K3 (6k x 4k) 78.0 1 4ZMJ C1 3.2 FSC 0.143 CUT-OFF cryoSPARC 3.2
non-uniform refinement
23292 MAXIMUM LIKELIHOOD MAXIMUM LIKELIHOOD RELION 3.1
focused classifications over Fab density with skip align
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