2024-11-20 REL RCSB RCSB RCSB 2022-11-23 2024-05-15 2024-05-15 2024-11-20 Bill & Melinda Gates Foundation OPP1115782/INV-002916 United States National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) UMI A1144462 United States HIV Env BG505_MD39_B11 SOSIP boosting trimer in complex with B11_d77.7 mouse Fab and RM20A3 Fab Torres JL Ozorowski G Ward AB mouse antibody, germline targeting, HIV-1, vaccine design, VIRAL PROTEIN, VIRAL PROTEIN-IMMUNE SYSTEM complex Xie Z Lin YC Steichen JM Ozorowski G Kratochvil S Ray R Torres JL Liguori A Kalyuzhniy O Wang X Warner JE Weldon SR Dale GA Kirsch KH Nair U Baboo S Georgeson E Adachi Y Kubitz M Jackson AM Richey ST Volk RM Lee JH Diedrich JK Prum T Falcone S Himansu S Carfi A Yates 3rd JR Paulson JC Sok D Ward AB Schief WR Batista FD mRNA-LNP HIV-1 trimer boosters elicit precursors to broad neutralizing antibodies. Science US 384 eadk0582 eadk0582 2024 38753770 doi:10.1126/science.adk0582 1095-9203 0038 SCIEAS 8f92 FULLOVERLAP HIV-1 Env BG505_MD39_B11 SOSIP in complex with Fabs B11_d77.7 and RM20A3 HIV-1 Env BG505_MD39_B11 SOSIP in complex with Fabs B11_d77.7 and RM20A3 0 1 2 3 4 5 6 BG505_MD39_B11 gp120 Human immunodeficiency virus 0.054126512 3 Homo sapiens LEVO AENLWVTVYYGVPVWKDAETTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHEDIIS LWDQSLKPCVKLTPLCVTLQCTNYTPNLTSMMRGELKNCSFNMTTELRDKKQKVYSLFYRLDVVQINENQGNRSNNSNKE YRLINCNTSAITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEV IIRSENITNNAKNILVQLNTPVQINCTRPNNNTVKSIRIGPGQAFYYTGDIIGDIRMAHCNVSKATWNETLGKVVKQLRK HFGNNTIIRFAQSSGGDLEVTTHSFNCGGEFFYCNTSGLFNSTWISNTSVQGSNSTGSNDSITLPCRIKQIINMWQRIGQ AMYAPPIQGVIRCVSNITGLILTRDGGSTNSTTETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRVVGRRRRR R RM20A3 Fab heavy chain Macaca mulatta 0.013511111000000001 3 Homo sapiens LEVO EVQLVETGGGLVQPGGSLKLSCRASGYTFSSFAMSWVRQAPGKGLEWVSLINDRGGLTFYVDSVKGRFTISRDNSKNTLS LQMHSLRDGDTAVYYCATGGMSSALQSSKYYFDFWGQGALVTVSS RM20A3 Fab light chain Macaca mulatta 0.013508799999999998 3 Homo sapiens LEVO ALTQPPSVSGSPGQSVTISCTGTSSDIGSYNYVSWYQQHPGKAPKLMIYDVTQRPSGVSDRFSGSKSGNTASLTISGLQA DDEADYYCSAYAGRQTFYIFGGGTRLTVLGQPKASPTVTLFPPSSEEL BG505_MD39_B11 gp41 Human immunodeficiency virus 0.018250541 3 Homo sapiens LEVO AVGIGAVSLGFLGAAGSTMGAASMTLTVQARNLLSGIVQQQSNLLRAPEPQQHLLKDTHWGIKQLQARVLAVEHYLRDQQ LLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALDGTKHHHH HH B11_d77.7 Fab heavy chain Mus musculus 0.014061645 3 Homo sapiens LEVO QVQLQESGPGLVQPSGTLSLTCAVSGDSISSNNWWTWVRQPPGKGLEWIGEIYQSGITKYNPSLKSRVSTSVDKSKNQFS LRLSSVTAADTAVYYCARSAISIFGVVVLGEYYYNGMDVWGQGTTVTVSS B11_d77.7 Fab kappa light chain Mus musculus 0.01176193 3 Homo sapiens LEVO DIQMTQSPASQSVSVGETVTITCRVSENIYSHLAWYQQKQGKSPQLLVYGATNLADGVPSRFSGSGSGTQYSLKINNLQS EDFGSYYCQHFWDAPYTFGGGTKLEIK 2-acetamido-2-deoxy-beta-D-glucopyranose 0.000221208 45 NAG singleParticle particle 5.9 7.4 Quantifoil R1.2/1.3 COPPER CARBON HOLEY PLASMA CLEANING ETHANE 100 277 FEI VITROBOT MARK IV
5-6 s blot time.
FEI TALOS ARCTICA FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 200 0.5 1.8 FEI TITAN KRIOS AUTOGRID HOLDER GATAN K2 SUMMIT (4k x 4k) COUNTING 9.8 50.7 1 cryosparc ab initio C3 3.14 FSC 0.143 CUT-OFF cryoSPARC 3.2 129821 MAXIMUM LIKELIHOOD MAXIMUM LIKELIHOOD emd_28941.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 416 416 416 0 0 0 416 416 416 478.4 478.4 478.4 90.0 90.0 90.0 X Y Z -1.209448 2.2102394 -0.00024286553 0.037233464 1.15 1.15 1.15 0.3 AUTHOR sharpened map emd_28941_msk_1.map emd_28941_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 416 416 416 0 0 0 416 416 416 478.4 478.4 478.4 90.0 90.0 90.0 X Y Z -0.2829979 0.895964 0.00054398645 0.029558396 1.15 1.15 1.15 AUTHOR half map B emd_28941_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 416 416 416 0 0 0 416 416 416 478.4 478.4 478.4 90.0 90.0 90.0 X Y Z -0.30489117 0.9160406 0.00053703476 0.029545816 1.15 1.15 1.15 AUTHOR half map A