2025-05-21 REL RCSB INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY EXPERIMENTAL_SUMMARY em_admin em_software _em_admin.last_update _em_software.name DATA_COLLECTION chem_comp_atom chem_comp_bond STRUCTURE_SUMMARY em_admin em_software pdbx_entry_details _em_admin.last_update _em_software.name RCSB RCSB 2022-10-21 2023-01-11 2023-01-11 2025-05-21 National Science Foundation (NSF, China) 31930069 China Shi H Wu C Zhang X glutamate dehydrogenase, GDH, Crystalline ice, LYASE Shi H Wu C Zhang X Structure UK 31 213 2023 36586403 doi:10.1016/j.str.2022.12.001 0969-2126 2005 STRUE6 8ew0 FULLOVERLAP Glutamate Dehydrogenase Glutamate Dehydrogenase 0 1 Bos taurus Glutamate dehydrogenase 1, mitochondrial Bos taurus 0.06160891 6 LEVO MYRYLGEALLLSRAGPAALGSASADSAALLGWARGQPAAAPQPGLVPPARRHYSEAAADREDDPNFFKMVEGFFDRGASI VEDKLVEDLKTRETEEQKRNRVRSILRIIKPCNHVLSLSFPIRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDE VKALASLMTYKCAVVDVPFGGAKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGVDVPAPDMSTGEREMSWIADTY ASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGMTPGFGDKTFVVQGFGNVGLHSMRYL HRFGAKCITVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKIYEGSILEVDCDILIPAASEKQLTKSNAPRVKAKI IAEGANGPTTPEADKIFLERNIMVIPDLYLNAGGVTVSYFEWLKNLNHVSYGRLTFKYERDSNYHLLMSVQESLERKFGK HGGTIPIVPTAEFQDRISGASEKDIVHSGLAYTMERSARQIMRTAMKYNLGLDLRTAAYVNAIEKVFRVYNEAGVTFT P00366 1.4.1.3 singleParticle particle 6.8 ETHANE FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 1.0 3.5 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN GATAN K2 QUANTUM (4k x 4k) SUPER-RESOLUTION 60.0 1 RELION PHASE FLIPPING AND AMPLITUDE CORRECTION 2.7 FSC 0.143 CUT-OFF 122399 MAXIMUM LIKELIHOOD RELION MAXIMUM LIKELIHOOD RELION RELION RIGID BODY FIT REAL emd_28639_msk_1.map emd_28639_additional_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 256 256 256 -128 -128 -128 256 256 256 209.92 209.92 209.92 90.0 90.0 90.0 X Y Z -0.05170729 0.1009386 -0.00013253847 0.00443009 0.82 0.82 0.82 AUTHOR ::::EMDATABANK.org::::EMD-28639:::: The EM map of Glutamate dehydrogenase (GDH) embedded in vitreous ice frozen at -183 celsius degree using standard procedure. The resolution of EM map is 3.1 angstrom emd_28639_additional_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 256 256 256 -128 -128 -128 256 256 256 209.92 209.92 209.92 90.0 90.0 90.0 X Y Z -0.1991393 0.3263086 -0.000040788193 0.012216044 0.82 0.82 0.82 AUTHOR ::::EMDATABANK.org::::EMD-28639:::: The EM map of Glutamate dehydrogenase (GDH) embedded in crystalline ice frozen at -183 celsius degree. The resolution of EM map is 2.5 angstrom emd_28639_additional_3.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 256 256 256 -128 -128 -128 256 256 256 209.92 209.92 209.92 90.0 90.0 90.0 X Y Z -0.012547176 0.057694744 -0.0001277936 0.0036559303 0.82 0.82 0.82 AUTHOR ::::EMDATABANK.org::::EMD-28639:::: The half map of Glutamate dehydrogenase (GDH) embedded in crystalline ice frozen at -183 celsius degree. emd_28639_additional_4.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 256 256 256 -128 -128 -128 256 256 256 209.92 209.92 209.92 90.0 90.0 90.0 X Y Z -0.013701468 0.05661804 -0.0001193972 0.0036572386 0.82 0.82 0.82 AUTHOR ::::EMDATABANK.org::::EMD-28639:::: The half map of Glutamate dehydrogenase (GDH) embedded in crystalline ice frozen at -183 celsius degree. emd_28639_additional_5.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 256 256 256 -128 -128 -128 256 256 256 209.92 209.92 209.92 90.0 90.0 90.0 X Y Z -0.063105285 0.10344786 0.0000013365506 0.004895495 0.82 0.82 0.82 AUTHOR ::::EMDATABANK.org::::EMD-28639:::: The EM map of Glutamate dehydrogenase (GDH) embedded in crystalline ice frozen at -140 celsius degree. The resolution of EM map is 3.1 angstrom emd_28639_additional_6.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 256 256 256 -128 -128 -128 256 256 256 209.92 209.92 209.92 90.0 90.0 90.0 X Y Z -0.01031879 0.028745547 -0.0000021073733 0.0020760184 0.82 0.82 0.82 AUTHOR ::::EMDATABANK.org::::EMD-28639:::: The half map of Glutamate dehydrogenase (GDH) embedded in crystalline ice frozen at -140 celsius degree. emd_28639_additional_7.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 256 256 256 -128 -128 -128 256 256 256 209.92 209.92 209.92 90.0 90.0 90.0 X Y Z -0.010823343 0.027915925 -0.0000054400293 0.002076943 0.82 0.82 0.82 AUTHOR ::::EMDATABANK.org::::EMD-28639:::: The half map of Glutamate dehydrogenase (GDH) embedded in crystalline ice frozen at -140 celsius degree. emd_28639_additional_8.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 256 256 256 -128 -128 -128 256 256 256 209.92 209.92 209.92 90.0 90.0 90.0 X Y Z -0.080845416 0.14262412 -0.00046341965 0.0066136145 0.82 0.82 0.82 AUTHOR ::::EMDATABANK.org::::EMD-28639:::: The EM map of Glutamate dehydrogenase (GDH) embedded in crystalline ice frozen at -60 celsius degree. The resolution of EM map is 3.1 angstrom emd_28639_additional_9.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 256 256 256 -128 -128 -128 256 256 256 209.92 209.92 209.92 90.0 90.0 90.0 X Y Z -0.06332218 0.1005046 -0.00010018144 0.004730842 0.82 0.82 0.82 AUTHOR ::::EMDATABANK.org::::EMD-28639:::: The EM map of Glutamate dehydrogenase (GDH) embedded in crystalline ice frozen at -60 celsius degree. The resolution of EM map is 3.2 angstrom emd_28639_additional_10.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 256 256 256 -128 -128 -128 256 256 256 209.92 209.92 209.92 90.0 90.0 90.0 X Y Z -0.021001035 0.03483661 -0.000161911 0.0024862522 0.82 0.82 0.82 AUTHOR ::::EMDATABANK.org::::EMD-28639:::: The half map of Glutamate dehydrogenase (GDH) embedded in crystalline ice frozen at -60 celsius degree. emd_28639_additional_11.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 256 256 256 -128 -128 -128 256 256 256 209.92 209.92 209.92 90.0 90.0 90.0 X Y Z -0.01667173 0.033981632 -0.00016180666 0.0024999392 0.82 0.82 0.82 AUTHOR ::::EMDATABANK.org::::EMD-28639:::: The half map of Glutamate dehydrogenase (GDH) embedded in crystalline ice frozen at -60 celsius degree. emd_28639_additional_12.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 256 256 256 -128 -128 -128 256 256 256 209.92 209.92 209.92 90.0 90.0 90.0 X Y Z -0.05025897 0.0941944 -0.0001785856 0.004732637 0.82 0.82 0.82 AUTHOR ::::EMDATABANK.org::::EMD-28639:::: The EM map of Glutamate dehydrogenase (GDH) embedded in crystalline ice frozen at -100 celsius degree. The resolution of EM map is 3.2 angstrom. emd_28639_additional_13.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 256 256 256 -128 -128 -128 256 256 256 209.92 209.92 209.92 90.0 90.0 90.0 X Y Z -0.018013103 0.034002747 -0.00018102716 0.0024935568 0.82 0.82 0.82 AUTHOR ::::EMDATABANK.org::::EMD-28639:::: The half map of Glutamate dehydrogenase (GDH) embedded in crystalline ice frozen at -100 celsius degree. emd_28639_additional_14.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 256 256 256 0 0 0 256 256 256 209.92 209.92 209.92 90.0 90.0 90.0 X Y Z -0.0185671 0.033373334 -0.00017614404 0.0024915591 0.82 0.82 0.82 AUTHOR ::::EMDATABANK.org::::D_1000269477:::: The half map of Glutamate dehydrogenase (GDH) embedded in crystalline ice frozen at -100 celsius degree. emd_28639_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 256 256 256 -128 -128 -128 256 256 256 209.92 209.92 209.92 90.0 90.0 90.0 X Y Z -0.010007889 0.046147764 -0.00014907245 0.0033798595 0.82 0.82 0.82 AUTHOR ::::EMDATABANK.org::::EMD-28639:::: The half map of Glutamate dehydrogenase (GDH) embedded in vitreous ice frozen at -183 celsius degree using standard procedure. emd_28639_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 256 256 256 -128 -128 -128 256 256 256 209.92 209.92 209.92 90.0 90.0 90.0 X Y Z -0.011508543 0.046731815 -0.00015138427 0.003379485 0.82 0.82 0.82 AUTHOR ::::EMDATABANK.org::::EMD-28639:::: The EM map of Glutamate dehydrogenase (GDH) embedded in vitreous ice frozen at -183 celsius degree using standard procedure.