<emd xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" emdb_id="EMD-2855" version="3.0.1.1" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v3/v3_0_1_1/emdb_relaxed.xsd">
   <admin>
      <current_status>
         <code>REL</code>
         <processing_site>PDBe</processing_site>
      </current_status>
      <sites>
         <deposition>PDBe</deposition>
         <last_processing>PDBe</last_processing>
      </sites>
      <key_dates>
         <deposition>2015-01-21</deposition>
         <header_release>2015-03-04</header_release>
         <map_release>2015-03-04</map_release>
         <update>2015-04-15</update>
      </key_dates>
      <title>CryoEM structure of dynactin complex with p150-glued projection</title>
      <authors_list>
         <author>Zhang K</author>
         <author>Urnavicius L</author>
         <author>Diamant AG</author>
         <author>Motz C</author>
         <author>Schlager MA</author>
         <author>Yu M</author>
         <author>Patel NA</author>
         <author>Robinson CV</author>
         <author>Carter AP</author>
      </authors_list>
      <keywords>dynactin, dynein co-factor, actin-like filament, cellular cargo transport</keywords>
   </admin>
   <crossreferences>
      <citation_list>
         <primary_citation>
            <journal_citation published="true">
               <author order="1">Urnavicius L</author>
               <author order="2">Zhang K</author>
               <author order="3">Diamant AG</author>
               <author order="4">Motz C</author>
               <author order="5">Schlager MA</author>
               <author order="6">Yu M</author>
               <author order="7">Patel NA</author>
               <author order="8">Robinson CV</author>
               <author order="9">Carter AP</author>
               <title>The structure of the dynactin complex and its interaction with dynein</title>
               <journal>SCIENCE</journal>
               <volume>347</volume>
               <first_page>1441</first_page>
               <last_page>1446</last_page>
               <year>2015</year>
               <external_references type="PUBMED">25814576</external_references>
               <external_references type="DOI">doi:10.1126/science.aaa4080</external_references>
            </journal_citation>
         </primary_citation>
      </citation_list>
   </crossreferences>
   <sample>
      <name>Dynactin complex from pig brain</name>
      <supramolecule_list>
         <sample_supramolecule supramolecule_id="1000">
            <name>Dynactin complex from pig brain</name>
            <details>he sample was stored in -80 degrees Celcius freezer before being loaded onto the grid.</details>
            <oligomeric_state>One dynactin complex</oligomeric_state>
            <number_unique_components>10</number_unique_components>
            <molecular_weight>
               <experimental units="MDa">1.06</experimental>
               <theoretical units="MDa">1.06</theoretical>
               <method>Mass spectrometry</method>
            </molecular_weight>
         </sample_supramolecule>
      </supramolecule_list>
      <macromolecule_list>
         <protein_or_peptide macromolecule_id="1">
            <name synonym="Arp1">Actin related protein 1</name>
            <natural_source database="NCBI">
               <organism ncbi="9825">Sus scrofa domesticus</organism>
               <synonym_organism>pig</synonym_organism>
               <tissue>Brain</tissue>
               <cellular_location>Cytoplasm</cellular_location>
            </natural_source>
            <molecular_weight>
               <experimental units="MDa">0.0426</experimental>
               <theoretical units="MDa">0.0426</theoretical>
            </molecular_weight>
            <number_of_copies>8</number_of_copies>
            <oligomeric_state>Octamer in actin like filament</oligomeric_state>
            <recombinant_exp_flag>false</recombinant_exp_flag>
            <recombinant_expression database="NCBI">
               </recombinant_expression>
            <sequence>
               </sequence>
         </protein_or_peptide>
         <protein_or_peptide macromolecule_id="2">
            <name synonym="Arp11">Actin related protein 11</name>
            <natural_source database="NCBI">
               <organism ncbi="9825">Sus scrofa domesticus</organism>
               <synonym_organism>pig</synonym_organism>
               <tissue>Brain</tissue>
               <cellular_location>Cytoplasm</cellular_location>
            </natural_source>
            <molecular_weight>
               <experimental units="MDa">0.0463</experimental>
               <theoretical units="MDa">0.0463</theoretical>
            </molecular_weight>
            <number_of_copies>8</number_of_copies>
            <oligomeric_state>Monomer</oligomeric_state>
            <recombinant_exp_flag>false</recombinant_exp_flag>
            <recombinant_expression database="NCBI">
               </recombinant_expression>
            <sequence>
               </sequence>
         </protein_or_peptide>
         <protein_or_peptide macromolecule_id="3">
            <name>beta-actin</name>
            <natural_source database="NCBI">
               <organism ncbi="9825">Sus scrofa domesticus</organism>
               <synonym_organism>pig</synonym_organism>
               <tissue>Brain</tissue>
               <cellular_location>Cytoplasm</cellular_location>
            </natural_source>
            <molecular_weight>
               <experimental units="MDa">0.043</experimental>
               <theoretical units="MDa">0.043</theoretical>
            </molecular_weight>
            <number_of_copies>1</number_of_copies>
            <oligomeric_state>Monomer</oligomeric_state>
            <recombinant_exp_flag>false</recombinant_exp_flag>
            <recombinant_expression database="NCBI">
               </recombinant_expression>
            <sequence>
               </sequence>
         </protein_or_peptide>
         <protein_or_peptide macromolecule_id="4">
            <name synonym="DCTN1">Dynactin subunit 1</name>
            <natural_source database="NCBI">
               <organism ncbi="9825">Sus scrofa domesticus</organism>
               <synonym_organism>pig</synonym_organism>
               <tissue>Brain</tissue>
               <cellular_location>Cytoplasm</cellular_location>
            </natural_source>
            <molecular_weight>
               <experimental units="MDa">0.15</experimental>
               <theoretical units="MDa">0.15</theoretical>
            </molecular_weight>
            <number_of_copies>2</number_of_copies>
            <oligomeric_state>Dimer</oligomeric_state>
            <recombinant_exp_flag>false</recombinant_exp_flag>
            <recombinant_expression database="NCBI">
               </recombinant_expression>
            <sequence>
               </sequence>
         </protein_or_peptide>
         <protein_or_peptide macromolecule_id="5">
            <name synonym="DCTN2">Dynactin subunit 2</name>
            <natural_source database="NCBI">
               <organism ncbi="9825">Sus scrofa domesticus</organism>
               <synonym_organism>pig</synonym_organism>
               <tissue>Brain</tissue>
               <cellular_location>Cytoplasm</cellular_location>
            </natural_source>
            <molecular_weight>
               <experimental units="MDa">0.05</experimental>
               <theoretical units="MDa">0.05</theoretical>
            </molecular_weight>
            <number_of_copies>4</number_of_copies>
            <oligomeric_state>Tetramer</oligomeric_state>
            <recombinant_exp_flag>false</recombinant_exp_flag>
            <recombinant_expression database="NCBI">
               </recombinant_expression>
            <sequence>
               </sequence>
         </protein_or_peptide>
         <protein_or_peptide macromolecule_id="6">
            <name synonym="DCTN3">Dynactin subunit 3</name>
            <natural_source database="NCBI">
               <organism ncbi="9825">Sus scrofa domesticus</organism>
               <synonym_organism>pig</synonym_organism>
               <tissue>Brain</tissue>
               <cellular_location>Cytoplasm</cellular_location>
            </natural_source>
            <molecular_weight>
               <experimental units="MDa">0.022</experimental>
               <theoretical units="MDa">0.022</theoretical>
            </molecular_weight>
            <number_of_copies>2</number_of_copies>
            <oligomeric_state>Dimer</oligomeric_state>
            <recombinant_exp_flag>false</recombinant_exp_flag>
            <recombinant_expression database="NCBI">
               </recombinant_expression>
            <sequence>
               </sequence>
         </protein_or_peptide>
         <protein_or_peptide macromolecule_id="7">
            <name synonym="CapZ">Actin capping protein</name>
            <natural_source database="NCBI">
               <organism ncbi="9825">Sus scrofa domesticus</organism>
               <synonym_organism>pig</synonym_organism>
               <tissue>Brain</tissue>
               <cellular_location>Cytoplasm</cellular_location>
            </natural_source>
            <molecular_weight>
               <experimental units="MDa">0.033</experimental>
               <theoretical units="MDa">0.033</theoretical>
            </molecular_weight>
            <number_of_copies>2</number_of_copies>
            <oligomeric_state>Heterodimer</oligomeric_state>
            <recombinant_exp_flag>false</recombinant_exp_flag>
            <recombinant_expression database="NCBI">
               </recombinant_expression>
            <sequence>
               </sequence>
         </protein_or_peptide>
         <protein_or_peptide macromolecule_id="8">
            <name synonym="DCTN4">Dynactin subunit 4</name>
            <natural_source database="NCBI">
               <organism ncbi="9825">Sus scrofa domesticus</organism>
               <synonym_organism>pig</synonym_organism>
               <tissue>Brain</tissue>
               <cellular_location>Cytoplasm</cellular_location>
            </natural_source>
            <molecular_weight>
               <experimental units="MDa">0.062</experimental>
               <theoretical units="MDa">0.062</theoretical>
            </molecular_weight>
            <number_of_copies>1</number_of_copies>
            <oligomeric_state>Monomer</oligomeric_state>
            <recombinant_exp_flag>false</recombinant_exp_flag>
            <recombinant_expression database="NCBI">
               </recombinant_expression>
            <sequence>
               </sequence>
         </protein_or_peptide>
         <protein_or_peptide macromolecule_id="9">
            <name synonym="DCTN5">Dynactin subunit 5</name>
            <natural_source database="NCBI">
               <organism ncbi="9825">Sus scrofa domesticus</organism>
               <synonym_organism>pig</synonym_organism>
               <tissue>Brain</tissue>
               <cellular_location>Cytoplasm</cellular_location>
            </natural_source>
            <molecular_weight>
               <experimental units="MDa">0.025</experimental>
               <theoretical units="MDa">0.025</theoretical>
            </molecular_weight>
            <number_of_copies>1</number_of_copies>
            <oligomeric_state>Monomer</oligomeric_state>
            <recombinant_exp_flag>false</recombinant_exp_flag>
            <recombinant_expression database="NCBI">
               </recombinant_expression>
            <sequence>
               </sequence>
         </protein_or_peptide>
         <protein_or_peptide macromolecule_id="10">
            <name synonym="DCTN6">Dynactin subunit 6</name>
            <natural_source database="NCBI">
               <organism ncbi="9825">Sus scrofa domesticus</organism>
               <synonym_organism>pig</synonym_organism>
               <tissue>Brain</tissue>
               <cellular_location>Cytoplasm</cellular_location>
            </natural_source>
            <molecular_weight>
               <experimental units="MDa">0.027</experimental>
               <theoretical units="MDa">0.027</theoretical>
            </molecular_weight>
            <number_of_copies>1</number_of_copies>
            <oligomeric_state>Monomer</oligomeric_state>
            <recombinant_exp_flag>false</recombinant_exp_flag>
            <recombinant_expression database="NCBI">
               </recombinant_expression>
            <sequence>
               </sequence>
         </protein_or_peptide>
      </macromolecule_list>
   </sample>
   <structure_determination_list>
      <structure_determination structure_determination_id="1">
         <method>singleParticle</method>
         <aggregation_state>particle</aggregation_state>
         <specimen_preparation_list>
            <single_particle_preparation preparation_id="1">
               <concentration units="mg/mL">0.07</concentration>
               <buffer>
                  <ph>6.5</ph>
                  <details>50mM KCl, 25mM KH2PO4-K2HPO4, 5mM DDT, 1mM MgCl2, 0.1 mM ATP</details>
               </buffer>
               <grid>
                  <details>R2/2 400 square mesh copper grid with thin carbon support</details>
               </grid>
               <vitrification>
                  <cryogen_name>ETHANE</cryogen_name>
                  <chamber_humidity units="percentage">100</chamber_humidity>
                  <chamber_temperature units="K">105</chamber_temperature>
                  <instrument>FEI VITROBOT MARK IV</instrument>
               </vitrification>
            </single_particle_preparation>
         </specimen_preparation_list>
         <microscopy_list>
            <single_particle_microscopy microscopy_id="1">
               <microscope>FEI TITAN KRIOS</microscope>
               <illumination_mode>FLOOD BEAM</illumination_mode>
               <imaging_mode>BRIGHT FIELD</imaging_mode>
               <electron_source>FIELD EMISSION GUN</electron_source>
               <acceleration_voltage units="kV">300</acceleration_voltage>
               <nominal_cs units="mm">2.7</nominal_cs>
               <nominal_defocus_min units="&#181;m">2.0</nominal_defocus_min>
               <nominal_defocus_max units="&#181;m">7.0</nominal_defocus_max>
               <nominal_magnification>47000.0</nominal_magnification>
               <calibrated_magnification>81495.0</calibrated_magnification>
               <specimen_holder_model>FEI TITAN KRIOS AUTOGRID HOLDER</specimen_holder_model>
               <temperature>
                  <temperature_min units="K">80</temperature_min>
                  <temperature_max units="K">100</temperature_max>
               </temperature>
               <alignment_procedure>
                  <legacy>
                     <astigmatism>Objective lens astigmatism was corrected at 96,000 times nominal magnification</astigmatism>
                     <electron_beam_tilt_params>0</electron_beam_tilt_params>
                  </legacy>
               </alignment_procedure>
               <date>2014-04-04</date>
               <image_recording_list>
                  <image_recording>
                     <film_or_detector_model category="CCD">FEI FALCON II (4k x 4k)</film_or_detector_model>
                     <number_real_images>4483</number_real_images>
                     <average_electron_dose_per_image units="e/&#8491;^2">51</average_electron_dose_per_image>
                     <details>51 frames per movie</details>
                     <bits_per_pixel>32.</bits_per_pixel>
                  </image_recording>
               </image_recording_list>
               <tilt_angle_min>0</tilt_angle_min>
               <tilt_angle_max>0</tilt_angle_max>
            </single_particle_microscopy>
         </microscopy_list>
         <singleparticle_processing image_processing_id="1">
            <details>The particles were selected using a GPU accelerated automatic program Gautomatch.
The CTF parameter were determined and refined using a GPU accelerated program Gctf</details>
            <ctf_correction>
               <details>Each particle by Gctf</details>
            </ctf_correction>
            <final_reconstruction>
               <applied_symmetry>
                  <point_group>C1</point_group>
               </applied_symmetry>
               <algorithm>OTHER</algorithm>
               <resolution res_type="BY AUTHOR" units="&#8491;">8.6</resolution>
               <resolution_method>OTHER</resolution_method>
               <software_list>
                  <software>
                     <name>Relion</name>
                  </software>
               </software_list>
               <number_images_used>12870</number_images_used>
            </final_reconstruction>
         </singleparticle_processing>
      </structure_determination>
   </structure_determination_list>
   <map format="CCP4" size_kbytes="182251">
      <file>emd_2855.map.gz</file>
      <symmetry>
         <space_group>1</space_group>
      </symmetry>
      <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
      <dimensions>
         <col>360</col>
         <row>360</row>
         <sec>360</sec>
      </dimensions>
      <origin>
         <col>-180</col>
         <row>-180</row>
         <sec>-180</sec>
      </origin>
      <spacing>
         <x>360</x>
         <y>360</y>
         <z>360</z>
      </spacing>
      <cell>
         <a units="&#8491;">612.0</a>
         <b units="&#8491;">612.0</b>
         <c units="&#8491;">612.0</c>
         <alpha units="deg">90.0</alpha>
         <beta units="deg">90.0</beta>
         <gamma units="deg">90.0</gamma>
      </cell>
      <axis_order>
         <fast>X</fast>
         <medium>Y</medium>
         <slow>Z</slow>
      </axis_order>
      <statistics>
         <minimum>-0.23348068</minimum>
         <maximum>0.4795756</maximum>
         <average>0.00077767</average>
         <std>0.01186519</std>
      </statistics>
      <pixel_spacing>
         <x units="&#8491;">1.7</x>
         <y units="&#8491;">1.7</y>
         <z units="&#8491;">1.7</z>
      </pixel_spacing>
      <contour_list>
         <contour primary="true">
            <level>0.088</level>
            <source>AUTHOR</source>
         </contour>
      </contour_list>
      <annotation_details>CryoEM reconstruction of dynactin complex with clear extra density of p150-glued projection at 8.6 angstrom resolution.</annotation_details>
      <details>::::EMDATABANK.org::::EMD-2855::::</details>
   </map>
</emd>