2024-06-19 REL RCSB RCSB RCSB 2022-10-04 2023-02-01 2023-02-01 2024-06-19 National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) GM131860 United States National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) GM098399 United States M. tuberculosis RNAP elongation complex with NusG and CMPCPP Vishwakarma RK Murakami KS Transcription elongation RNA polymerase pausing NusG cryo-EM, TRANSCRIPTION Vishwakarma RK Qayyum MZ Babitzke P Murakami KS Allosteric mechanism of transcription inhibition by NusG-dependent pausing of RNA polymerase. Proc.Natl.Acad.Sci.USA US 120 e2218516120 e2218516120 2023 36745813 doi:10.1073/pnas.2218516120 1091-6490 0040 PNASA6 8eos FULLOVERLAP Transcription elongation complex with M. tuberculosis NusG and CMPCPP Transcription elongation complex with M. tuberculosis NusG and CMPCPP 0 1 2 3 4 5 6 7 8
It contains M. tuberculosis RNA polymerase, DNA/RNA scaffold, M. tuberculosis NusG and CMPCPP
Mycobacterium tuberculosis H37Rv DNA-directed RNA polymerase subunit alpha Mycobacterium tuberculosis H37Rv ATCC 25618 / H37Rv 0.037745328 2 Escherichia coli BL21(DE3) LEVO MLISQRPTLSEDVLTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVLHEFTTVPGVKEDVTEIILNL KSLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHNPGMHIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIG RIPVDSIYSPVLKVTYKVDATRVEQRTDFDKLILDVETKNSISPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKIKLHQLGLSLKDSPPSFDPSEV AGYDVATGTWSTEGAYDEQDYAETEQL P9WGZ1 2.7.7.6 DNA-directed RNA polymerase subunit beta Mycobacterium tuberculosis H37Rv ATCC 25618 / H37Rv 0.13001882799999998 1 Escherichia coli BL21(DE3) LEVO MLEGCILADSRQSKTAASPSPSRPQSSSNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLIGSPRWRESAAERGDV NPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDDVKAPVDECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMM TEKGTFIINGTERVVVSQLVRSPGVYFDETIDKSTDKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA LGWTSEQIVERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLARVGRYKVNKKL GLHVGEPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVETDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVV RERMTTQDVEAITPQTLINIRPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHY GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIVYLTADEEDRHVVAQANSPIDADGRFVEPRVL VRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGD VVVAEESGVIEEVSADYITVMHDNGTRRTYRMRKFARSNHGTCANQCPIVDAGDRVEAGQVIADGPCTDDGEMALGKNLL VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNISDEVLADLDERGIVRIGAEVRDGD ILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIGIRVFSREDEDELPAGVNELVRVYVAQKRKIS DGDKLAGRHGNKGVIGKILPVEDMPFLADGTPVDIILNTHGVPRRMNIGQILETHLGWCAHSGWKVDAAKGVPDWAARLP DELLEAQPNAIVSTPVFDGAQEAELQGLLSCTLPNRDGDVLVDADGKAMLFDGRSGEPFPYPVTVGYMYIMKLHHLVDDK IHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPES FKVLLKELQSLCLNVEVLSSDGAAIELREGEDEDLERAAANLGINLSRNESASVEDLA P9WGY9 2.7.7.6 DNA-directed RNA polymerase subunit beta' Mycobacterium tuberculosis H37Rv ATCC 25618 / H37Rv 0.146968969 1 Escherichia coli BL21(DE3) LEVO MLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWECYCGKYKRVRFKGIICERCGV EVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDLAPKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERK AVEDQRDGELEARAQKLEADLAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVAAFQQSGNSPMGMVLDAVPVI PPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDLGAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLK SLSDLLKGKQGRFRQNLLGKRVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQMAVHLPLSAEAQAEARILML SSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQPASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQL RPPVEIEAELFGHSGWQPGDAWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKEATDEVGQALREHYPDDNPII TIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSFREGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDV SQDVIVREHDCQTERGIVVELAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGVGEDITGGLPRVQELFEARVP RGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKISKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHE VLRVQGPREVQIHLVREVQEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPAGTGINRYRNIAVQPTEEARA AAYTIPSYEDQYYSPDFGAATGAAVPLDDYGYSDYR P9WGY7 2.7.7.6 DNA-directed RNA polymerase subunit omega Mycobacterium tuberculosis H37Rv ATCC 25618 / H37Rv 0.01185114 1 Escherichia coli BL21(DE3) LEVO MSISQSDASLAAVPAVDQFDPSSGASGGYDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDYYNQLGEGILEYVG PLVEPGLQEKPLSIALREIHADLLEHTEGE P9WGY5 2.7.7.6 Transcription termination/antitermination protein NusG Mycobacterium tuberculosis H37Rv ATCC 25618 / H37Rv 0.025471504 1 Escherichia coli BL21(DE3) LEVO MTTFDGDTSAGEAVDLTEANAFQDAAAPAEEVDPAAALKAELRSKPGDWYVVHSYAGYENKVKANLETRVQNLDVGDYIF QVEVPTEEVTEIKNGQRKQVNRKVLPGYILVRMDLTDDSWAAVRNTPGVTGFVGATSRPSALALDDVVKFLLPRGSTRKA AKGAASTAAAAEAGGLERPVVEVDYEVGESVTVMDGPFATLPATISEVNAEQQKLKVLVSIFGRETPVELTFGQVSKI P9WIU9 DNA (38-MER) synthetic construct 0.012211804 1 (DC)(DG)(DG)(DC)(DA)(DG)(DT)(DC)(DG)(DC)(DC)(DG)(DT)(DG)(DT)(DA)(DC)(DC)(DT)(DC) (DT)(DC)(DC)(DA)(DT)(DG)(DA)(DG)(DC)(DA)(DG)(DC)(DA)(DT)(DG)(DC)(DG)(DC)(DC)(DC) DNA DNA (36-MER) synthetic construct 0.012324891999999999 1 (DG)(DG)(DG)(DC)(DG)(DC)(DA)(DT)(DG)(DC)(DT)(DG)(DC)(DT)(DC)(DA)(DT)(DC)(DA)(DA) (DA)(DG)(DC)(DC)(DA)(DT)(DG)(DA)(DC)(DG)(DG)(DC)(DG)(DA)(DC)(DT)(DG)(DC)(DC)(DG) DNA RNA (5'-R(P*AP*AP*GP*CP*GP*GP*AP*GP*AP*GP*GP*UP*A)-3') synthetic construct 0.006509968 1 GCAUUCAAAGCGGAGAGGUA 5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]methyl}phosphoryl]cytidine 0.000481184 1 2TM MAGNESIUM ION 2.4305e-05 2 MG ZINC ION 6.5409e-05 2 ZN singleParticle particle 7.9 Quantifoil R2/1 CARBON CONTINUOUS ETHANE 100 283 FEI VITROBOT MARK IV
Blot for 4-5 seconds before plunging in liquid ethane.
FEI TITAN KRIOS OTHER OTHER FIELD EMISSION GUN 300 0.75 2.5 FEI FALCON IV (4k x 4k) 45.0 1 6EDT 3.1 FSC 0.143 CUT-OFF 129716 ANGULAR RECONSTITUTION PROJECTION MATCHING emd_28466.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 400 400 400 0 0 0 400 400 400 348.0 348.0 348.0 90.0 90.0 90.0 X Y Z -0.73446375 1.9637791 0.001401709 0.058840863 0.87 0.87 0.87 0.182 AUTHOR emd_28466_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 400 400 400 0 0 0 400 400 400 348.0 348.0 348.0 90.0 90.0 90.0 X Y Z -0.8884076 2.3572063 0.002732036 0.08589793 0.87 0.87 0.87 AUTHOR emd_28466_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 400 400 400 0 0 0 400 400 400 348.0 348.0 348.0 90.0 90.0 90.0 X Y Z -0.8609645 2.2633762 0.002720052 0.085909896 0.87 0.87 0.87 AUTHOR