REL PDBe PDBe PDBe 2014-12-02 2015-01-21 2015-01-21 2015-03-11 Cryo-EM map of a mammalian 60S ribosome-nascent chain-tRNA complex with Listerin and NEMF Shao S Brown A Santhanam B Hegde RS ribosome-associated quality control, ubiquitin ligase Shao S Brown A Santhanam B Hegde RS Structure and assembly pathway of the ribosome quality control complex. MOLECULAR CELL 57 433 444 2015 25578875 doi:10.1016/j.molcel.2014.12.015 3j92 FULLOVERLAP rabbit 60S ribosomal subunit housing an in vitro translated nascent chain attached to a P-site tRNA in complex with the E3 ligase Listerin and NEMF. rabbit 60S ribosomal subunit housing an in vitro translated nascent chain attached to a P-site tRNA in complex with the E3 ligase Listerin and NEMF. 5 60S ribosomal subunit false Oryctolagus cuniculus rabbit reticulocyte cytosol 2.9 ribosome-eukaryote: LSU 60S, LSU RNA 28S, LSU RNA 5.8S, LSU RNA 5S transfer RNA Sus scrofa pig 0.025 OTHER OTHER false nascent chain unidentified 0.02
in vitro translated substrate
1 false Listerin Homo sapiens human cytosol 0.2 1 true Homo sapiens HEK293T pcDNA3.1 O94822 NEMF Homo sapiens human cytosol 0.12 1 true Homo sapiens HEK293T pcDNA3.1 O60524 singleParticle particle 0.3 7.4
50 mM Hepes, 100 mM KAc, 5 mM MgAc2, 1 mM DTT
Quantifoil R2/2 on 400 mesh Cu grid with thin carbon support
 ETHANE 100 FEI VITROBOT MARK I Blot for 3 seconds before plunging FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 2.7 2.0 3.5 59000.0 104478.0 FEI TITAN KRIOS AUTOGRID HOLDER Objective lens astigmatism was corrected at 59,000 times magnification 2014-04-30 FEI FALCON II (4k x 4k) 30 FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 2.7 2.0 3.5 59000.0 104478.0 FEI TITAN KRIOS AUTOGRID HOLDER Objective lens astigmatism was corrected at 59,000 times magnification 2014-08-18 FEI FALCON II (4k x 4k) 30
RELION movement correction processing
C1 3.6 OTHER CTFFIND3, RELION 63826 emd_2832.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 320 320 320 0 0 0 320 320 320 428.80002 428.80002 428.80002 90.0 90.0 90.0 X Y Z -0.23654813 0.49433696 0.0025526 0.01947696 1.34 1.34 1.34 0.08 AUTHOR reconstruction of the rabbit 60S ribosomal subunit housing a defined nascent chain-P-site tRNA in complex with the E3 ligase Listerin and NEMF
::::EMDATABANK.org::::EMD-2832::::
 4W1Z RIGID BODY FIT Chimera, Coot RECIPROCAL 4W20 RIGID BODY FIT Chimera, Coot RECIPROCAL
emd_2832.tif