<?xml version="1.0" encoding="UTF-8"?>
<emd emdb_id="EMD-28171" version="3.0.2.10">
    <admin>
        <current_status>
            <date>2023-02-15</date>
            <code>REL</code>
            <processing_site>RCSB</processing_site>
        </current_status>
        <sites>
            <deposition>RCSB</deposition>
            <last_processing>RCSB</last_processing>
        </sites>
        <key_dates>
            <deposition>2022-09-15</deposition>
            <header_release>2023-01-25</header_release>
            <map_release>2023-01-25</map_release>
            <update>2023-02-15</update>
        </key_dates>
        <grant_support>
            <grant_reference>
                <funding_body>Bill &amp; Melinda Gates Foundation</funding_body>
                <code>INV-0006133</code>
                <country>United States</country>
            </grant_reference>
            <grant_reference>
                <funding_body>National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)</funding_body>
                <code>U19 AI142790-03S1</code>
                <country>United States</country>
            </grant_reference>
            <grant_reference>
                <funding_body>GHR Foundation</funding_body>
                <country>United States</country>
            </grant_reference>
        </grant_support>
        <title>Negative stain EM map of SARS-CoV-2 Spike in complex with CoVIC-371</title>
        <authors_list>
            <author ORCID="0000-0003-4003-3854">Callaway H</author>
            <author ORCID="0000-0003-4003-3854">Li H</author>
            <author ORCID="0000-0003-4003-3854">Yu X</author>
            <author ORCID="0000-0003-4003-3854">Shek J</author>
            <author ORCID="0000-0003-4003-3854">Saphire EO</author>
        </authors_list>
    </admin>
    <crossreferences>
        <citation_list>
            <primary_citation>
                <journal_citation published="true">
                    <author order="1">Callaway HM</author>
                    <author order="2">Hastie KM</author>
                    <author order="3">Schendel SL</author>
                    <author order="4">Li H</author>
                    <author order="5">Yu X</author>
                    <author order="6">Shek J</author>
                    <author order="7">Buck T</author>
                    <author order="8">Hui S</author>
                    <author order="9">Bedinger D</author>
                    <author order="10">Troup C</author>
                    <author order="11">Dennison SM</author>
                    <author order="12">Li K</author>
                    <author order="13">Alpert MD</author>
                    <author order="14">Bailey CC</author>
                    <author order="15">Benzeno S</author>
                    <author order="16">Bonnevier JL</author>
                    <author order="17">Chen JQ</author>
                    <author order="18">Chen C</author>
                    <author order="19">Cho H</author>
                    <author order="20">Crompton PD</author>
                    <author order="21">Dussupt V</author>
                    <author order="22">Entzminger KC</author>
                    <author order="23">Ezzyat Y</author>
                    <author order="24">Fleming JK</author>
                    <author order="25">Geukens N</author>
                    <author order="26">Gilbert AE</author>
                    <author order="27">Guan Y</author>
                    <author order="28">Han X</author>
                    <author order="29">Harvey CJ</author>
                    <author order="30">Hatler JM</author>
                    <author order="31">Howie B</author>
                    <author order="32">Hu C</author>
                    <author order="33">Huang A</author>
                    <author order="34">Imbrechts M</author>
                    <author order="35">Jin A</author>
                    <author order="36">Kamachi N</author>
                    <author order="37">Keitany G</author>
                    <author order="38">Klinger M</author>
                    <author order="39">Kolls JK</author>
                    <author order="40">Krebs SJ</author>
                    <author order="41">Li T</author>
                    <author order="42">Luo F</author>
                    <author order="43">Maruyama T</author>
                    <author order="44">Meehl MA</author>
                    <author order="45">Mendez-Rivera L</author>
                    <author order="46">Musa A</author>
                    <author order="47">Okumura CJ</author>
                    <author order="48">Rubin BER</author>
                    <author order="49">Sato AK</author>
                    <author order="50">Shen M</author>
                    <author order="51">Singh A</author>
                    <author order="52">Song S</author>
                    <author order="53">Tan J</author>
                    <author order="54">Trimarchi JM</author>
                    <author order="55">Upadhyay DP</author>
                    <author order="56">Wang Y</author>
                    <author order="57">Yu L</author>
                    <author order="58">Yuan TZ</author>
                    <author order="59">Yusko E</author>
                    <author order="60">Peters B</author>
                    <author order="61">Tomaras G</author>
                    <author order="62">Saphire EO</author>
                    <title>Bivalent intra-spike binding provides durability against emergent Omicron lineages: Results from a global consortium.</title>
                    <journal_abbreviation>Cell Rep</journal_abbreviation>
                    <country>US</country>
                    <volume>42</volume>
                    <first_page>112014</first_page>
                    <last_page>112014</last_page>
                    <year>2023</year>
                    <external_references type="PUBMED">36681898</external_references>
                    <external_references type="DOI">doi:10.1016/j.celrep.2023.112014</external_references>
                    <external_references type="ISSN">2211-1247</external_references>
                </journal_citation>
            </primary_citation>
        </citation_list>
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            <emdb_reference>
                <emdb_id>EMD-28171</emdb_id>
                <relationship>
                    <other>associated EM volume</other>
                </relationship>
            </emdb_reference>
        </emdb_list>
    </crossreferences>
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        <name>Negative stain EM map of SARS-CoV-2 Spike in complex with CoVIC-371</name>
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            <complex_supramolecule supramolecule_id="1" chimera="true">
                <name>Negative stain EM map of SARS-CoV-2 Spike in complex with CoVIC-371</name>
                <parent>0</parent>
                <natural_source database="NCBI">
                    <organism ncbi="2697049">Severe acute respiratory syndrome coronavirus 2</organism>
                </natural_source>
            </complex_supramolecule>
        </supramolecule_list>
    </sample>
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        <structure_determination structure_determination_id="1">
            <method>singleParticle</method>
            <aggregation_state>particle</aggregation_state>
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                <single_particle_preparation preparation_id="1">
                    <concentration units="mg/mL">0.1</concentration>
                    <buffer>
                        <ph>7.4</ph>
                    </buffer>
                    <staining>
                        <type>NEGATIVE</type>
                        <material>Uranyl Formate</material>
                    </staining>
                </single_particle_preparation>
            </specimen_preparation_list>
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                <single_particle_microscopy microscopy_id="1">
                    <microscope>FEI TITAN</microscope>
                    <illumination_mode>FLOOD BEAM</illumination_mode>
                    <imaging_mode>BRIGHT FIELD</imaging_mode>
                    <electron_source>FIELD EMISSION GUN</electron_source>
                    <acceleration_voltage units="kV">300</acceleration_voltage>
                    <nominal_defocus_min units="µm">2.0</nominal_defocus_min>
                    <nominal_defocus_max units="µm">4.0</nominal_defocus_max>
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                        <image_recording image_recording_id="1">
                            <film_or_detector_model>FEI FALCON III (4k x 4k)</film_or_detector_model>
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                        </image_recording>
                    </image_recording_list>
                </single_particle_microscopy>
            </microscopy_list>
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                    <resolution units="Å" res_type="BY AUTHOR">18.0</resolution>
                    <resolution_method>FSC 0.143 CUT-OFF</resolution_method>
                    <number_images_used>43491</number_images_used>
                </final_reconstruction>
                <initial_angle_assignment>
                    <type>NOT APPLICABLE</type>
                </initial_angle_assignment>
                <final_angle_assignment>
                    <type>NOT APPLICABLE</type>
                </final_angle_assignment>
            </singleparticle_processing>
        </structure_determination>
    </structure_determination_list>
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        <file>emd_28171.map.gz</file>
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            <average>-0.009893895</average>
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            <y units="Å">3.331</y>
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                <level>0.643</level>
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        </contour_list>
        <label>::::EMDATABANK.org::::EMD-28171::::</label>
        <annotation_details>Negative stain EM map of SARS-CoV-2 Spike in complex with CoVIC-371</annotation_details>
    </map>
    <interpretation>
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                <label>::::EMDATABANK.org::::EMD-28171::::</label>
                <annotation_details>Half Map A</annotation_details>
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                <annotation_details>Half Map B</annotation_details>
            </half_map>
        </half_map_list>
    </interpretation>
</emd>
