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   <admin>
      <current_status>
         <code>REL</code>
         <processing_site>PDBe</processing_site>
      </current_status>
      <sites>
         <deposition>PDBe</deposition>
         <last_processing>PDBe</last_processing>
      </sites>
      <key_dates>
         <deposition>2014-11-04</deposition>
         <header_release>2014-12-24</header_release>
         <map_release>2015-01-07</map_release>
         <update>2015-01-07</update>
      </key_dates>
      <title>Electron cryo-microscopy of yeast 60S ribosome</title>
      <authors_list>
         <author>Shen PS</author>
         <author>Park J</author>
         <author>Qin Y</author>
         <author>Li X</author>
         <author>Parsawar K</author>
         <author>Larson M</author>
         <author>Cox J</author>
         <author>Cheng Y</author>
         <author>Lambowitz AM</author>
         <author>Weissman JS</author>
         <author>Brandman O</author>
         <author>Frost A</author>
      </authors_list>
      <keywords>ribosome quality control complex, RQC, eukaryotic ribosome rescue, stalled nascent chain</keywords>
   </admin>
   <crossreferences>
      <citation_list>
         <primary_citation>
            <journal_citation published="true">
               <author order="1">Shen PS</author>
               <author order="2">Park J</author>
               <author order="3">Qin Y</author>
               <author order="4">Li X</author>
               <author order="5">Parsawar K</author>
               <author order="6">Larson M</author>
               <author order="7">Cox J</author>
               <author order="8">Cheng Y</author>
               <author order="9">Lambowitz AM</author>
               <author order="10">Weissman JS</author>
               <author order="11">Brandman O</author>
               <author order="12">Frost A</author>
               <title>Rqc2p and the 60S ribosome mediate mRNA-independent elongation of nascent chains</title>
               <journal>SCIENCE</journal>
               <volume>347</volume>
               <first_page>75</first_page>
               <last_page>78</last_page>
               <year>2015</year>
               <external_references type="DOI">doi:10.1126/science.1259724</external_references>
            </journal_citation>
         </primary_citation>
      </citation_list>
   </crossreferences>
   <sample>
      <name>RQC particles purified by co-IP of Rqc1</name>
      <supramolecule_list>
         <sample_supramolecule supramolecule_id="1000">
            <name>RQC particles purified by co-IP of Rqc1</name>
            <number_unique_components>1</number_unique_components>
         </sample_supramolecule>
         <complex_supramolecule supramolecule_id="1">
            <name synonym="large ribosomal subunit">60S ribosome</name>
            <recombinant_exp_flag>false</recombinant_exp_flag>
            <natural_source database="NCBI">
               <organism ncbi="4932">Saccharomyces cerevisiae</organism>
               <strain>BY4741</strain>
               <synonym_organism>Baker's yeast</synonym_organism>
            </natural_source>
            <recombinant_expression database="NCBI">
               </recombinant_expression>
            <ribosome-details>ribosome-eukaryote: LSU 60S, LSU RNA 28S, LSU RNA 5.8S, LSU RNA 5S</ribosome-details>
         </complex_supramolecule>
      </supramolecule_list>
   </sample>
   <structure_determination_list>
      <structure_determination structure_determination_id="1">
         <method>singleParticle</method>
         <aggregation_state>particle</aggregation_state>
         <specimen_preparation_list>
            <single_particle_preparation preparation_id="1">
               <buffer>
                  <ph>7.4</ph>
                  <details>100mM KOAc, 10mM MgCl2, 25mM HEPES-KOH</details>
               </buffer>
               <grid>
                  <details>200 mesh Quantifoil R2/2 grid + lacey carbon grid with ultrathin carbon</details>
               </grid>
               <vitrification>
                  <cryogen_name>ETHANE</cryogen_name>
                  <chamber_humidity units="percentage">75</chamber_humidity>
                  <chamber_temperature units="K">90</chamber_temperature>
                  <instrument>FEI VITROBOT MARK III</instrument>
                  <method>Blot for 3 seconds before plunging</method>
               </vitrification>
            </single_particle_preparation>
         </specimen_preparation_list>
         <microscopy_list>
            <single_particle_microscopy microscopy_id="1">
               <microscope>FEI POLARA 300</microscope>
               <illumination_mode>FLOOD BEAM</illumination_mode>
               <imaging_mode>BRIGHT FIELD</imaging_mode>
               <electron_source>FIELD EMISSION GUN</electron_source>
               <acceleration_voltage units="kV">300</acceleration_voltage>
               <nominal_cs units="mm">2</nominal_cs>
               <nominal_defocus_min units="&#181;m">0.8</nominal_defocus_min>
               <nominal_defocus_max units="&#181;m">2.0</nominal_defocus_max>
               <nominal_magnification>31000.0</nominal_magnification>
               <specimen_holder_model>GATAN LIQUID NITROGEN</specimen_holder_model>
               <temperature>
                  <temperature_min units="K">80</temperature_min>
                  <temperature_max units="K">90</temperature_max>
                  <temperature_average units="K">85</temperature_average>
               </temperature>
               <specialist_optics>
                  <energy_filter>
                     <name>Gatan</name>
                  </energy_filter>
               </specialist_optics>
               <details>UCSF Image4 on-the-fly motion correction</details>
               <date>2013-07-22</date>
               <image_recording_list>
                  <image_recording>
                     <film_or_detector_model category="CCD">GATAN K2 (4k x 4k)</film_or_detector_model>
                     <number_real_images>3459</number_real_images>
                     <average_electron_dose_per_image units="e/&#8491;^2">35</average_electron_dose_per_image>
                     <bits_per_pixel>8.</bits_per_pixel>
                  </image_recording>
               </image_recording_list>
               <specimen_holder>LN2 cooled</specimen_holder>
               <tilt_angle_min>0</tilt_angle_min>
               <tilt_angle_max>0</tilt_angle_max>
            </single_particle_microscopy>
         </microscopy_list>
         <singleparticle_processing image_processing_id="1">
            <details>Particles were selected using the semi-automated swarm tool in e2boxer.py of the EMAN2 package. All 2D and 3D processing was performed in RELION.</details>
            <ctf_correction>
               <details>each particle</details>
            </ctf_correction>
            <final_reconstruction>
               <applied_symmetry>
                  <point_group>C1</point_group>
               </applied_symmetry>
               <resolution res_type="BY AUTHOR" units="&#8491;">3.5</resolution>
               <resolution_method>OTHER</resolution_method>
               <software_list>
                  <software>
                     <name>RELION, CTFFIND3</name>
                  </software>
               </software_list>
               <details>micrographs were motion-corrected via the UCSFImage4 package; final resolution was calculated by applying a soft mask around the ribosome</details>
               <number_images_used>79423</number_images_used>
            </final_reconstruction>
            <final_two_d_classification>
               <number_classes>1</number_classes>
            </final_two_d_classification>
         </singleparticle_processing>
      </structure_determination>
   </structure_determination_list>
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      <file>emd_2811.map.gz</file>
      <symmetry>
         <space_group>1</space_group>
      </symmetry>
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         <col>420</col>
         <row>420</row>
         <sec>420</sec>
      </dimensions>
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         <y>420</y>
         <z>420</z>
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      <cell>
         <a units="&#8491;">512.4</a>
         <b units="&#8491;">512.4</b>
         <c units="&#8491;">512.4</c>
         <alpha units="deg">90.0</alpha>
         <beta units="deg">90.0</beta>
         <gamma units="deg">90.0</gamma>
      </cell>
      <axis_order>
         <fast>X</fast>
         <medium>Y</medium>
         <slow>Z</slow>
      </axis_order>
      <statistics>
         <minimum>-0.13663945</minimum>
         <maximum>0.25627005</maximum>
         <average>0.00041419</average>
         <std>0.00594279</std>
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      <contour_list>
         <contour primary="true">
            <level>0.035</level>
            <source>AUTHOR</source>
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      <annotation_details>Reconstruction of yeast 60S ribosome</annotation_details>
      <details>::::EMDATABANK.org::::EMD-2811::::</details>
   </map>
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