<emd xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" emdb_id="EMD-2808" version="3.0.1.1" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v3/v3_0_1_1/emdb_relaxed.xsd">
   <admin>
      <current_status>
         <code>REL</code>
         <processing_site>PDBe</processing_site>
      </current_status>
      <sites>
         <deposition>PDBe</deposition>
         <last_processing>PDBe</last_processing>
      </sites>
      <key_dates>
         <deposition>2014-10-31</deposition>
         <header_release>2014-11-12</header_release>
         <map_release>2014-11-19</map_release>
         <update>2014-12-24</update>
      </key_dates>
      <title>Electron cryo-microscopy of the HerA-NurA double strand break resection complex</title>
      <authors_list>
         <author>Byrne RT</author>
         <author>Schuller JM</author>
         <author>Unverdorben P</author>
         <author>Foerster F</author>
         <author>Hopfner K-P</author>
      </authors_list>
      <keywords>Helicase, Nuclease, FtsK/HerA ATPase, DNA double-strand break repair, DNA resection</keywords>
   </admin>
   <crossreferences>
      <citation_list>
         <primary_citation>
            <journal_citation published="true">
               <author order="1">Byrne RT</author>
               <author order="2">Schuller JM</author>
               <author order="3">Unverdorben P</author>
               <author order="4">Foerster F</author>
               <author order="5">Hopfner K-P</author>
               <title>Molecular architecture of the HerA-NurA DNA double-strand break resection complex</title>
               <journal>FEBS LETT.</journal>
               <volume>588</volume>
               <first_page>4637</first_page>
               <last_page>4644</last_page>
               <year>2014</year>
               <external_references type="PUBMED">25447518</external_references>
               <external_references type="DOI">doi:10.1016/j.febslet.2014.10.035</external_references>
            </journal_citation>
         </primary_citation>
      </citation_list>
   </crossreferences>
   <sample>
      <name>HerA from Sulfolobus Solfataricus NurA from Sulfolobus Solfataricus</name>
      <supramolecule_list>
         <sample_supramolecule supramolecule_id="1000">
            <name>HerA from Sulfolobus Solfataricus NurA from Sulfolobus Solfataricus</name>
            <details>The sample was monodisperse</details>
            <oligomeric_state>One homohexamer of HerA binds to one homodimer of NurA</oligomeric_state>
            <number_unique_components>2</number_unique_components>
            <molecular_weight>
               <experimental units="MDa">0.419</experimental>
               <theoretical units="MDa">0.416</theoretical>
               <method>SEC-RALS</method>
            </molecular_weight>
         </sample_supramolecule>
      </supramolecule_list>
      <macromolecule_list>
         <protein_or_peptide macromolecule_id="1">
            <name synonym="SSO2251">HerA</name>
            <natural_source database="NCBI">
               <organism ncbi="2287">Sulfolobus solfataricus</organism>
               <strain>P2</strain>
            </natural_source>
            <molecular_weight>
               <theoretical units="MDa">0.056</theoretical>
            </molecular_weight>
            <number_of_copies>6</number_of_copies>
            <oligomeric_state>homohexamer</oligomeric_state>
            <recombinant_exp_flag>true</recombinant_exp_flag>
            <recombinant_expression database="NCBI">
               <recombinant_organism ncbi="562">Escherichia coli</recombinant_organism>
               <recombinant_strain>Rosetta</recombinant_strain>
               <recombinant_plasmid>pET-Duet-1</recombinant_plasmid>
            </recombinant_expression>
            <sequence>
               <external_references type="UNIPROTKB">Q97WG8</external_references>
            </sequence>
         </protein_or_peptide>
         <protein_or_peptide macromolecule_id="2">
            <name synonym="SSO2248">NurA</name>
            <natural_source database="NCBI">
               <organism ncbi="2287">Sulfolobus solfataricus</organism>
               <strain>P2</strain>
            </natural_source>
            <molecular_weight>
               <theoretical units="MDa">0.039</theoretical>
            </molecular_weight>
            <number_of_copies>2</number_of_copies>
            <oligomeric_state>dimer</oligomeric_state>
            <recombinant_exp_flag>true</recombinant_exp_flag>
            <recombinant_expression database="NCBI">
               <recombinant_organism ncbi="562">Escherichia coli</recombinant_organism>
               <recombinant_strain>Rosetta</recombinant_strain>
               <recombinant_plasmid>pET-Duet-1</recombinant_plasmid>
            </recombinant_expression>
            <sequence>
               <external_references type="UNIPROTKB">Q97WH1</external_references>
            </sequence>
         </protein_or_peptide>
      </macromolecule_list>
   </sample>
   <structure_determination_list>
      <structure_determination structure_determination_id="1">
         <method>singleParticle</method>
         <aggregation_state>particle</aggregation_state>
         <specimen_preparation_list>
            <single_particle_preparation preparation_id="1">
               <concentration units="mg/mL">0.05</concentration>
               <buffer>
                  <ph>8.0</ph>
                  <details>100 mM NaCl, 20 mM Hepes</details>
               </buffer>
               <grid>
                  <details>2:1 holey carbon grids (Quantifoil Micro Tools, Germany)</details>
               </grid>
               <vitrification>
                  <cryogen_name>ETHANE</cryogen_name>
                  <chamber_temperature units="K">93</chamber_temperature>
                  <instrument>HOMEMADE PLUNGER</instrument>
                  <method>Blot for 2 seconds before plunging, wash twice with water</method>
               </vitrification>
            </single_particle_preparation>
         </specimen_preparation_list>
         <microscopy_list>
            <single_particle_microscopy microscopy_id="1">
               <microscope>FEI TITAN KRIOS</microscope>
               <illumination_mode>FLOOD BEAM</illumination_mode>
               <imaging_mode>BRIGHT FIELD</imaging_mode>
               <electron_source>FIELD EMISSION GUN</electron_source>
               <acceleration_voltage units="kV">300</acceleration_voltage>
               <nominal_cs units="mm">2</nominal_cs>
               <nominal_defocus_min units="&#181;m">1.5</nominal_defocus_min>
               <nominal_defocus_max units="&#181;m">3.0</nominal_defocus_max>
               <nominal_magnification>81000.0</nominal_magnification>
               <specimen_holder_model>FEI TITAN KRIOS AUTOGRID HOLDER</specimen_holder_model>
               <alignment_procedure>
                  <legacy>
                     <astigmatism>Objective lens astigmatism was corrected at 100,000 times magnification</astigmatism>
                  </legacy>
               </alignment_procedure>
               <specialist_optics>
                  <energy_filter>
                     <name>GIF QUANTUM</name>
                     <lower_energy_threshold units="eV">0.0</lower_energy_threshold>
                     <upper_energy_threshold units="eV">20.0</upper_energy_threshold>
                  </energy_filter>
               </specialist_optics>
               <date>2014-08-22</date>
               <image_recording_list>
                  <image_recording>
                     <film_or_detector_model category="CCD">GATAN K2 (4k x 4k)</film_or_detector_model>
                     <number_real_images>863</number_real_images>
                     <average_electron_dose_per_image units="e/&#8491;^2">25</average_electron_dose_per_image>
                     <details>Every image is the average of 20 frames recorded by the direct electron detector</details>
                  </image_recording>
               </image_recording_list>
            </single_particle_microscopy>
         </microscopy_list>
         <singleparticle_processing image_processing_id="1">
            <details>The particles were semi-manually selected in e2boxer and further processed in RELION</details>
            <ctf_correction>
               <details>On the micrograph level</details>
            </ctf_correction>
            <final_reconstruction>
               <applied_symmetry>
                  <point_group>C2</point_group>
               </applied_symmetry>
               <algorithm>OTHER</algorithm>
               <resolution res_type="BY AUTHOR" units="&#8491;">7.35</resolution>
               <resolution_method>OTHER</resolution_method>
               <software_list>
                  <software>
                     <name>RELION</name>
                  </software>
               </software_list>
               <details>see detailed method in paper</details>
               <number_images_used>100000</number_images_used>
            </final_reconstruction>
         </singleparticle_processing>
      </structure_determination>
   </structure_determination_list>
   <map format="CCP4" size_kbytes="13185">
      <file>emd_2808.map.gz</file>
      <symmetry>
         <space_group>1</space_group>
      </symmetry>
      <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
      <dimensions>
         <col>150</col>
         <row>150</row>
         <sec>150</sec>
      </dimensions>
      <origin>
         <col>0</col>
         <row>0</row>
         <sec>0</sec>
      </origin>
      <spacing>
         <x>150</x>
         <y>150</y>
         <z>150</z>
      </spacing>
      <cell>
         <a units="&#8491;">265.5</a>
         <b units="&#8491;">265.5</b>
         <c units="&#8491;">265.5</c>
         <alpha units="deg">90.0</alpha>
         <beta units="deg">90.0</beta>
         <gamma units="deg">90.0</gamma>
      </cell>
      <axis_order>
         <fast>X</fast>
         <medium>Y</medium>
         <slow>Z</slow>
      </axis_order>
      <statistics>
         <minimum>-0.15550664</minimum>
         <maximum>0.18389343</maximum>
         <average>0.00030055</average>
         <std>0.00911862</std>
      </statistics>
      <pixel_spacing>
         <x units="&#8491;">1.77</x>
         <y units="&#8491;">1.77</y>
         <z units="&#8491;">1.77</z>
      </pixel_spacing>
      <contour_list>
         <contour primary="true">
            <level>0.04</level>
            <source>AUTHOR</source>
         </contour>
      </contour_list>
      <annotation_details>Reconstruction of the HerA-NurA double strand break resection complex from Sulfolobus solfataricus</annotation_details>
      <details>::::EMDATABANK.org::::EMD-2808::::</details>
   </map>
   <interpretation>
      <figure_list>
         <figure>
            <file>emd_2808.tif</file>
         </figure>
      </figure_list>
   </interpretation>
</emd>