2024-06-19 REL RCSB RCSB RCSB 2022-09-02 2023-02-01 2023-02-01 2024-06-19 Not funded Arthrobacter phage Bridgette Podgorski JM White SJ HK97-fold, T=7, tailed bacteriophage, VIRUS Podgorski JM Freeman K Gosselin S Huet A Conway JF Bird M Grecco J Patel S Jacobs-Sera D Hatfull G Gogarten JP Ravantti J White SJ A structural dendrogram of the actinobacteriophage major capsid proteins provides important structural insights into the evolution of capsid stability. Structure UK 31 282 2023 36649709 doi:10.1016/j.str.2022.12.012 0969-2126 2005 STRUE6 EMD-28017 other EM volume EMD-28018 other EM volume EMD-28020 other EM volume EMD-28021 other EM volume 8eci FULLOVERLAP Arthrobacter phage Bridgette Arthrobacter phage Bridgette 0 1 2 Arthrobacter phage Bridgette Arthrobacter globiformis 700.0 7 VIRION STRAIN false false Decoration protein Arthrobacter phage Bridgette 0.012219239 2 LEVO MATGRTTEGRTVTVTTASNTTITGAAGTFVASDVGRTITRAGIPAGTTITAVASGTSATISAAATTSATSAATLGSLNGQ SQGLVGWSPETDTEAGAYSVAATNAGTVTPDRLTNAFTPVSQRGRG A0A3G2KE53 Major capsid protein Arthrobacter phage Bridgette 0.035259766000000005 7 LEVO MGIYRKKDVIPIPYNNLTSRTDAQALIPEEVSKEMLGKATEQSAVLQQFRRIPVGRNQVRFPVLSALPVAYWVNGDTGLK QTTEINWTNKYLNIEEIATIVPVPDNVLADVDVNVWDEAMPYLIEAFGRTLDSAVVFGTNAPGTFPQAIVPAIAAAGNAV TEGSTAAQGGYLGDLDKAYGKVEEDGFEANGIIAGIGLKGKLRGARDANGQKIDPTRVGADLKSIDGLPVSYPMRGLWPS AGGAGTNVRALVGDWSQFVVGVRQDITLKVLDQAVIQDNTGAIIYNLAQQDMTALRLTFRVGWQVANTLNNDQPTEANRY PAASLIF A0A3G2KE56 singleParticle particle 10 7.5 10.0 C4H11NO3 Tris 10.0 MgSO4 Magnesium sulfate 68.44 NaCl Sodium chloride ETHANE 100 283 FEI VITROBOT MARK IV FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 2.7 1.0 3.0 FEI TITAN KRIOS AUTOGRID HOLDER GATAN K3 (6k x 4k) COUNTING 4303 0.575 1
Relion SGD
 I 4.0 FSC 0.143 CUT-OFF RELION 3.1.0 13926 MAXIMUM LIKELIHOOD RELION 3.1.0 MAXIMUM LIKELIHOOD RELION 3.1.0 3 RELION 3.1.0 emd_28016.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 800 800 800 0 0 0 800 800 800 1058.3999 1058.3999 1058.3999 90.0 90.0 90.0 Z Y X -12.973827999999999 21.044031 0.000000000001642 1.0 1.3229998 1.3229998 1.3229998 3.0 AUTHOR Sharpened map of ewald sphere corrected map. AB INITIO MODEL
Amino acid sequence built into the map for a single major capsid protein and refined with Phenix. Model then used for rest of asymmetric unit and refined with Phenix. Final step involved using Isolde.
 emd_28016_msk_1.map emd_28016_additional_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 800 800 800 0 0 0 800 800 800 1058.3999 1058.3999 1058.3999 90.0 90.0 90.0 X Y Z -0.034139942 0.05773856 -0.00008274132 0.0028614872 1.3229998 1.3229998 1.3229998 AUTHOR Ewald sphere corrected map. emd_28016_additional_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 800 800 800 0 0 0 800 800 800 1058.3999 1058.3999 1058.3999 90.0 90.0 90.0 X Y Z -0.016290247 0.022364879 -0.00017956416 0.0023216377 1.3229998 1.3229998 1.3229998 AUTHOR Map After CTF Refinement. emd_28016_additional_3.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 800 800 800 0 0 0 800 800 800 1058.3999 1058.3999 1058.3999 90.0 90.0 90.0 X Y Z -0.0051761433 0.017176403 0.00011298117 0.0012176931 1.3229998 1.3229998 1.3229998 AUTHOR Map before CTF Refinement. emd_28016_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 800 800 800 0 0 0 800 800 800 1058.3999 1058.3999 1058.3999 90.0 90.0 90.0 X Y Z -0.019828811 0.026338834 -0.00008201635 0.0015528793 1.3229998 1.3229998 1.3229998 AUTHOR Ewald sphere half map. emd_28016_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 800 800 800 0 0 0 800 800 800 1058.3999 1058.3999 1058.3999 90.0 90.0 90.0 X Y Z -0.017061604 0.029300151 -0.00008346629 0.0015613202 1.3229998 1.3229998 1.3229998 AUTHOR Ewald sphere half map.