2024-06-19 REL RCSB RCSB RCSB 2022-08-27 2022-11-30 2022-11-30 2024-06-19 National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) R01GM124463 United States National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) S10OD030470-01 United States Rizo AN Park J-U Tsai AW Kellogg EH DNA BINDING PROTEIN, DNA BINDING PROTEIN-DNA-RNA complex Park JU Tsai AW Rizo AN Truong VH Wellner TX Schargel RD Kellogg EH Nature UK 613 775 782 2023 36442503 doi:10.1038/s41586-022-05573-5 1476-4687 0006 NATUAS EMD-27972 other EM volume 8ea3 FULLOVERLAP 12_TnsC ShCAST Transpososome 12_TnsC ShCAST Transpososome 0 1 2 3 4 5 6 7 8 9 10 11 12 Scytonema hofmannii Target_LE synthetic construct 0.043440839999999994 1 (DG)(DT)(DC)(DA)(DC)(DA)(DA)(DT)(DG)(DA)(DC)(DA)(DT)(DT)(DA)(DA)(DT)(DC)(DT)(DG) (DT)(DC)(DA)(DC)(DC)(DG)(DA)(DC)(DG)(DA)(DC)(DA)(DG)(DA)(DT)(DA)(DA)(DT)(DT)(DT) (DG)(DT)(DC)(DA)(DC)(DT)(DG)(DT)(DA)(DC)(DA)(DG)(DT)(DA)(DG)(DA)(DA)(DT)(DA)(DT) (DA)(DG)(DA)(DT)(DG)(DC)(DG)(DC)(DA)(DT)(DC)(DT)(DA)(DT)(DA)(DT)(DA)(DG)(DA)(DT) (DG)(DC)(DA)(DA)(DA)(DT)(DT)(DG)(DA)(DG)(DT)(DG)(DG)(DC)(DC)(DT)(DT)(DA)(DT)(DT) (DA)(DA)(DA)(DT)(DG)(DA)(DC)(DT)(DT)(DC)(DT)(DC)(DA)(DA)(DC)(DC)(DA)(DG)(DT)(DC) (DA)(DG)(DC)(DA)(DC)(DG)(DC)(DC)(DC)(DA)(DG)(DA)(DC)(DC)(DA)(DG)(DG)(DG)(DC)(DA) (DC) DNA Non-target_R synthetic construct 0.021814982 1 (DG)(DC)(DG)(DT)(DG)(DC)(DT)(DG)(DA)(DC)(DT)(DG)(DG)(DT)(DT)(DC)(DT)(DC)(DT)(DT) (DC)(DA)(DG)(DT)(DA)(DT)(DT)(DA)(DA)(DT)(DA)(DA)(DG)(DG)(DC)(DC)(DA)(DC)(DT)(DC) (DA)(DA)(DT)(DT)(DT)(DG)(DC)(DA)(DT)(DC)(DT)(DA)(DT)(DA)(DT)(DA)(DG)(DA)(DT)(DG) (DC)(DG)(DC)(DA)(DT)(DC)(DT)(DA)(DT)(DA)(DT) DNA sg_RNA synthetic construct 0.08526125 1 AUAUUAAUAGCGCCGCAAUUCAUGCUGCUUGCAGCCUCUGAAUUUUGUUAAAUGAGGGUUAGUUUGACUGUAUAAAUACA GUCUUGCUUUCUGACCCUGGUAGCUGCUCACCCUGAUGCUGCUGUCAAUAGACAGGAUAGGUGCGCUCCCAGCAAUAAGG GCGCGGAUGUACUGCUGUAGUGGCUACUGAAUCACCCCCGAUCAAGGGGGAACCCUCCAAAAGGUGGGUUGAAAGGAGAA GUCAUUUAAUAAGGCCACUGUUAAA TnsC Scytonema hofmannii 0.031444616999999994 12 Escherichia coli LEVO MTEAQAIAKQLGGVKPDDEWLQAEIARLKGKSIVPLQQVKTLHDWLDGKRKARKSCRVVGESRTGKTVACDAYRYRHKPQ QEAGRPPTVPVVYIRPHQKCGPKDLFKKITEYLKYRVTKGTVSDFRDRTIEVLKGCGVEMLIIDEADRLKPETFADVRDI AEDLGIAVVLVGTDRLDAVIKRDEQVLERFRAHLRFGKLSGEDFKNTVEMWEQMVLKLPVSSNLKSKEMLRILTSATEGY IGRLDEILREAAIRSLSRGLKKIDKAVLQEVAKEYK A0A8J0PCL3 Cas12k Scytonema hofmannii 0.073280719 1 Escherichia coli LEVO MSQITIQARLISFESNRQQLWKLMADLNTPLINELLCQLGQHPDFEKWQQKGKLPSTVVSQLCQPLKTDPRFAGQPSRLY MSAIHIVDYIYKSWLAIQKRLQQQLDGKTRWLEMLNSDAELVELSGDTLEAIRVKAAEILAIAMPASESDSASPKGKKGK KEKKPSSSSPKRSLSKTLFDAYQETEDIKSRSAISYLLKNGCKLTDKEEDSEKFAKRRRQVEIQIQRLTEKLISRMPKGR DLTNAKWLETLLTATTTVAEDNAQAKRWQDILLTRSSSLPFPLVFETNEDMVWSKNQKGRLCVHFNGLSDLIFEVYCGNR QLHWFQRFLEDQQTKRKSKNQHSSGLFTLRNGHLVWLEGEGKGEPWNLHHLTLYCCVDNRLWTEEGTEIVRQEKADEITK FITNMKKKSDLSDTQQALIQRKQSTLTRINNSFERPSQPLYQGQSHILVGVSLGLEKPATVAVVDAIANKVLAYRSIKQL LGDNYELLNRQRRQQQYLSHERHKAQKNFSPNQFGASELGQHIDRLLAKAIVALARTYKAGSIVLPKLGDMREVVQSEIQ AIAEQKFPGYIEGQQKYAKQYRVNVHRWSYGRLIQSIQSKAAQTGIVIEEGKQPIRGSPHDKAKELALSAYNLRLTRRS A0A8M0FGU0 TniQ Scytonema hofmannii 0.019011240000000002 1 Escherichia coli LEVO MIEAPDVKPWLFLIKPYEGESLSHFLGRFRRANHLSASGLGTLAGIGAIVARWERFHFNPRPSQQELEAIASVVEVDAQR LAQMLPPAGVGMQHEPIRLCGACYAESPCHRIEWQYKSVWKCDRHQLKILAKCPNCQAPFKMPALWEDGCCHRCRMPFAE MAKLQKV A0A8J0PCL5 30S ribosomal protein S15 Escherichia coli 0.010290816 1 Escherichia coli LEVO MSLSTEATAKIVSEFGRDANDTGSTEVQVALLTAQINHLQGHFAEHKKDHHSRRGLLRMVSQRRKLLDYLKRKDVARYTQ LIERLGLRR D8EB41 TnsB Scytonema hofmannii 0.06663707 8 Escherichia coli LEVO MNSQQNPDLAVHPLAIPMEGLLGESATTLEKNVIATQLSEEAQVKLEVIQSLLEPCDRTTYGQKLREAAEKLNVSLRTVQ RLVKNWEQDGLVGLTQTSRADKGKHRIGEFWENFITKTYKEGNKGSKRMTPKQVALRVEAKARELKDSKPPNYKTVLRVL APILEKQQKAKSIRSPGWRGTTLSVKTREGKDLSVDYSNHVWQCDHTRVDVLLVDQHGEILSRPWLTTVIDTYSRCIMGI NLGFDAPSSGVVALALRHAILPKRYGSEYKLHCEWGTYGKPEHFYTDGGKDFRSNHLSQIGAQLGFVCHLRDRPSEGGVV ERPFKTLNDQLFSTLPGYTGSNVQERPEDAEKDARLTLRELEQLLVRYIVDRYNQSIDARMGDQTRFERWEAGLPTVPVP IPERDLDICLMKQSRRTVQRGGCLQFQNLMYRGEYLAGYAGETVNLRFDPRDITTILVYRQENNQEVFLTRAHAQGLETE QLALDEAEAASRRLRTAGKTISNQSLLQEVVDRDALVATKKSRKERQKLEQTVLRSAAVDESNRESLPSQIVEPDEVEST ETVHSQYEDIEVWDYEQLREEYGF LE_R synthetic construct 0.015775137 1 (DT)(DG)(DT)(DA)(DC)(DA)(DG)(DT)(DG)(DA)(DC)(DA)(DA)(DA)(DT)(DT)(DA)(DT)(DC)(DT) (DG)(DT)(DC)(DG)(DT)(DC)(DG)(DG)(DT)(DG)(DA)(DC)(DA)(DG)(DA)(DT)(DT)(DA)(DA)(DT) (DG)(DT)(DC)(DA)(DT)(DT)(DG)(DT)(DG)(DA)(DC) DNA RE_F synthetic construct 0.02308083 1 (DT)(DT)(DA)(DC)(DT)(DG)(DA)(DT)(DG)(DA)(DC)(DA)(DA)(DT)(DA)(DA)(DT)(DT)(DT)(DG) (DT)(DC)(DA)(DC)(DA)(DA)(DC)(DG)(DA)(DC)(DA)(DT)(DA)(DT)(DA)(DA)(DT)(DT)(DA)(DG) (DT)(DC)(DA)(DC)(DT)(DG)(DT)(DA)(DC)(DA)(DT)(DC)(DT)(DA)(DC)(DG)(DA)(DT)(DA)(DC) (DG)(DT)(DA)(DG)(DC)(DG)(DG)(DC)(DC)(DG)(DA)(DC)(DG)(DC)(DG) DNA RE_R1 synthetic construct 0.015443954 1 (DT)(DG)(DT)(DA)(DC)(DA)(DG)(DT)(DG)(DA)(DC)(DT)(DA)(DA)(DT)(DT)(DA)(DT)(DA)(DT) (DG)(DT)(DC)(DG)(DT)(DT)(DG)(DT)(DG)(DA)(DC)(DA)(DA)(DA)(DT)(DT)(DA)(DT)(DT)(DG) (DT)(DC)(DA)(DT)(DC)(DA)(DG)(DT)(DA)(DA) DNA RE_R2 synthetic construct 0.006086917 1 (DC)(DG)(DC)(DG)(DT)(DC)(DG)(DG)(DC)(DC)(DG)(DC)(DT)(DA)(DC)(DG)(DT)(DA)(DT)(DC) DNA MAGNESIUM ION 2.4305e-05 14 MG ADENOSINE-5'-TRIPHOSPHATE 0.000507181 12 ATP singleParticle particle 7.4 ETHANE 100 FEI VITROBOT MARK IV TFS KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 1.0 2.5 FEI TITAN KRIOS AUTOGRID HOLDER GATAN K3 (6k x 4k) 50.0 1 1 3.7 FSC 0.143 CUT-OFF 188055 MAXIMUM LIKELIHOOD MAXIMUM LIKELIHOOD emd_27971_msk_1.map emd_27971_additional_3.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 540 540 540 0 0 0 540 540 540 576.18 576.18 576.18 90.0 90.0 90.0 X Y Z -2.7924845 5.2643785 0.00007238723 0.084591635 1.067 1.067 1.067 AUTHOR ::::EMDATABANK.org::::EMD-27971:::: emd_27971_additional_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 540 540 540 0 0 0 540 540 540 576.18 576.18 576.18 90.0 90.0 90.0 X Y Z -4.358136 5.319748 0.0000816583 0.07922764 1.067 1.067 1.067 AUTHOR ::::EMDATABANK.org::::EMD-27971:::: emd_27971_additional_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 540 540 540 0 0 0 540 540 540 576.18 576.18 576.18 90.0 90.0 90.0 X Y Z -0.5737204 1.5533423 0.00010550959 0.037952952 1.067 1.067 1.067 AUTHOR ::::EMDATABANK.org::::EMD-27971:::: emd_27971_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 540 540 540 0 0 0 540 540 540 576.18 576.18 576.18 90.0 90.0 90.0 X Y Z -1.7450663 2.143594 0.0009914424 0.19521567 1.067 1.067 1.067 AUTHOR ::::EMDATABANK.org::::EMD-27971:::: emd_27971_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 540 540 540 0 0 0 540 540 540 576.18 576.18 576.18 90.0 90.0 90.0 X Y Z -1.5594742 2.049093 0.0009998225 0.195222 1.067 1.067 1.067 AUTHOR ::::EMDATABANK.org::::EMD-27971::::