2023-01-11 REL RCSB RCSB RCSB 2022-08-18 2023-01-11 2023-01-11 2023-01-11 National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) AI150524 United States Ito F Alvarez-Cabrera AL Liu S Yang H Shiriaeva A Zhou ZH Chen XS Ito F Alvarez-Cabrera AL Liu S Yang H Shiriaeva A Zhou ZH Chen XS Sci Adv US 9 eade3168 eade3168 2023 36598981 doi:10.1126/sciadv.ade3168 2375-2548 EMD-27875 other EM volume EMD-27885 associated EM volume EMD-27887 other EM volume Complex of APOBEC3G with HIV-1 Vif, CBF-beta, Elongin-B, Elongin-C, Cullin-5, and RING-box protein 2 Complex of APOBEC3G with HIV-1 Vif, CBF-beta, Elongin-B, Elongin-C, Cullin-5, and RING-box protein 2 0 1 2 3 4 5 6 7 Human immunodeficiency virus 1 0.210 APOBEC3G Macaca mulatta Escherichia coli LEVO GPGGSGGMKPQIRNMVEPMDPRTFVSNFNNRPILSGLDTVWLCCEVKTKDPSGPPLDAKIFQGKVYPKAKYHPEMRFLRWFHKWRQLHHDQEYKVTWYVSWSPCTRCANSVATFLAKDPKVTLTIFVARLYYFWDPDYQQALRILAEAGATMKIMNYNEFQDCWNKFVDGRGKPFKPWNNLPKHYTLLQATLGELLRHLMDPGTFTSNFNNKPWVSGQHETYLCYKVERLHNDTWVPLNQHRGFLRNQAPNIHGFPKGRHAQLCFLDLIPFWKLDGQQYRVTCFTSWSPCFSCAQEMAKFISNNEHVSLCIFAARIYDDQGRYQEGLRTLHRDGAKIAMMNYSEFEYCWDTFVDRQGRPFQPWDGLDEHSQALSGRLRAILQNQGN Virion infectivity factor Human immunodeficiency virus 1 Escherichia coli LEVO GP MENRWQVMIV WQVDRMRINT WKRLVKHHMY ISRKAKDWFY RHHYESTNPK ISSEVHIPLG DAKLVITTYW GLHTGERDWH LGQGVSIEWR KKRYSTQVDP DLADQLIHLH YFDCFSESAI RNTILGRIVS PRCEYQAGHN KVGSLQYLAL AALIKPKQIK PPLPSVRKLT EDRWNK Core-binding factor subunit beta Homo sapiens Escherichia coli LEVO MPRVVPDQRS KFENEEFFRK LSRECEIKYT GFRDRPHEER QARFQNACRD GRSEIAFVAT GTNLSLQFFP ASWQGEQRQT PSREYVDLER EAGKVYLKAP MILNGVCVIW KGWIDLQRLD GMGCLEFDEE RAQQEDALAQ QAFEEARRRT REFEDRD Elongin-B Homo sapiens Escherichia coli LEVO MDVFLMIRRH KTTIFTDAKE SSTVFELKRI VEGILKRPPD EQRLYKDDQL LDDGKTLGEC GFTSQTARPQ APATVGLAFR ADDTFEALCI EPFSSPPELP DV Elongin-C Homo sapiens Escherichia coli LEVO MYVKLISSDG HEFIVKREHA LTSGTIKAML SGPGQFAENE TNEVNFREIP SHVLSKVCMY FTYKVRYTNS STEIPEFPIA PEIALELLMA ANFLDC Cullin-5 Homo sapiens Escherichia coli LEVO SLQFEDKWD FMRPIVLKLL RQESVTKQQW FDLFSDVHAV CLWDDKGPAK IHQALKEDIL EFIKQAQARV LSHQDDTALL KAYIVEWRKF FTQCDILPKP FCQLEITLMG KQGSNKKSNV EDSIVRKLML DTWNESIFSN IKNRLQDSAM KLVHAERLGE AFDSQLVIGV RESYVNLCSN PEDKLQIYRD NFEKAYLDST ERFYRTQAPS YLQQNGVQNY MKYADAKLKE EEKRALRYLE TRRECNSVEA LMECCVNALV TSFKETILAE CQGMIKRNET EKLHLMFSLM DKVPNGIEPM LKDLEEHIIS AGLADMVAAA ETITTDSEKY VEQLLTLFNR FSKLVKEAFQ DDPRFLTARD KAYKAVVNDA TIFKLELPLK QKGVGLKTQP ESKCPELLAN YCDMLLRKTP LSKKLTSEEI EAKLKEVLLV LKYVQNKDVF MRYHKAHLTR RLILDISADS EIEENMVEWL REVGMPADYV NKLARMFQDI KVSEDLNQAF KEMHKNNKLA LPADSVNIKI LNAGAWSRSS EKVFVSLPTE LEDLIPEVEE FYKKNHSGRK LHWHHLMSNG IITFKNEVGQ YDLEVTTFQL AVLFAWNQRP REKISFENLK LATELPDAEL RRTLWSLVAF PKLKRQVLLY EPQVNSPKDF TEGTLFSVNQ EFSLIKNAKV QKRGKINLIG RLQLTTERMR EEENEGIVQL RILRTQEAII QIMKMRKKIS NAQLQTELVE ILKNMFLPQK KMIKEQIEWL IEHKYIRRDE SDINTFIYMA RING-box protein 2 Homo sapiens Escherichia coli LEVO MADVEDGEET CALASHSGSS GSKSGGDKMF SLKKWNAVAM WSWDVECDTC AICRVQVMDA CLRCQAENKQ EDCVVVWGEC NHSFHNCCMS LWVKQNNRCP LCQQDWVVQR IGK singleParticle particle 0.15 7.5 ETHANE 100 277 FEI VITROBOT MARK IV TFS GLACIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 200 50.0 2.0 1.2 3.0 150000.0 FEI FALCON IV (4k x 4k) 1 11803 8.0 40.0 1 5032127 Generated by stochastic gradient descent using ab intio reconstruction in cryoSPARC. 5.4 FSC 0.143 CUT-OFF cryoSPARC 3 38571 MAXIMUM LIKELIHOOD cryoSPARC 3 MAXIMUM LIKELIHOOD cryoSPARC 3 emd_27885_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 512 512 512 0 0 0 512 512 512 471.04 471.04 471.04 90.0 90.0 90.0 X Y Z -0.11896731 0.37871015 6.319367e-05 0.011223112 0.92 0.92 0.92 AUTHOR ::::EMDATABANK.org::::EMD-27885:::: emd_27885_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 512 512 512 0 0 0 512 512 512 471.04 471.04 471.04 90.0 90.0 90.0 X Y Z -0.12102868 0.35841876 4.6314137e-05 0.011103249 0.92 0.92 0.92 AUTHOR ::::EMDATABANK.org::::EMD-27885::::