<emd xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" emdb_id="EMD-2788" version="3.0.1.1" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v3/v3_0_1_1/emdb_relaxed.xsd">
   <admin>
      <current_status>
         <code>REL</code>
         <processing_site>PDBe</processing_site>
      </current_status>
      <sites>
         <deposition>PDBe</deposition>
         <last_processing>PDBe</last_processing>
      </sites>
      <key_dates>
         <deposition>2014-10-01</deposition>
         <header_release>2014-11-19</header_release>
         <map_release>2014-12-10</map_release>
         <update>2016-02-17</update>
      </key_dates>
      <title>3D structure of horse spleen apoferritin determined by electron cryomicroscopy</title>
      <authors_list>
         <author>Russo CJ</author>
         <author>Passmore LA</author>
      </authors_list>
      <keywords>iron storage</keywords>
   </admin>
   <crossreferences>
      <citation_list>
         <primary_citation>
            <journal_citation published="true">
               <author order="1">Russo CJ</author>
               <author order="2">Passmore LA</author>
               <title>Electron microscopy: Ultrastable gold substrates for electron cryomicroscopy.</title>
               <journal>SCIENCE</journal>
               <volume>346</volume>
               <first_page>1377</first_page>
               <last_page>1380</last_page>
               <year>2014</year>
               <external_references type="PUBMED">25504723</external_references>
               <external_references type="DOI">doi:10.1126/science.1259530</external_references>
            </journal_citation>
         </primary_citation>
      </citation_list>
      <pdb_list>
         <pdb_reference>
            <pdb_id>4v1w</pdb_id>
            <relationship>
               <in_frame>FULLOVERLAP</in_frame>
            </relationship>
         </pdb_reference>
      </pdb_list>
   </crossreferences>
   <sample>
      <name>Horse spleen apoferritin</name>
      <supramolecule_list>
         <sample_supramolecule supramolecule_id="1000">
            <name>Horse spleen apoferritin</name>
            <oligomeric_state>24 subunits combine to form one octahedral complex</oligomeric_state>
            <number_unique_components>1</number_unique_components>
            <molecular_weight>
               <theoretical units="MDa">0.44</theoretical>
            </molecular_weight>
         </sample_supramolecule>
      </supramolecule_list>
      <macromolecule_list>
         <protein_or_peptide macromolecule_id="1">
            <name>FERRITIN LIGHT CHAIN</name>
            <natural_source database="NCBI">
               <organism ncbi="9796">Equus caballus</organism>
               <synonym_organism>Horse</synonym_organism>
               <tissue>Spleen</tissue>
            </natural_source>
            <molecular_weight>
               <theoretical units="MDa">0.0185</theoretical>
            </molecular_weight>
            <number_of_copies>24</number_of_copies>
            <oligomeric_state>24mer</oligomeric_state>
            <recombinant_exp_flag>false</recombinant_exp_flag>
            <recombinant_expression database="NCBI">
               </recombinant_expression>
            <sequence>
               <external_references type="UNIPROTKB">P02791</external_references>
            </sequence>
         </protein_or_peptide>
      </macromolecule_list>
   </sample>
   <structure_determination_list>
      <structure_determination structure_determination_id="1">
         <method>singleParticle</method>
         <aggregation_state>particle</aggregation_state>
         <specimen_preparation_list>
            <single_particle_preparation preparation_id="1">
               <concentration units="mg/mL">3.5</concentration>
               <buffer>
                  <ph>7.4</ph>
                  <details>PBS</details>
               </buffer>
               <grid>
                  <details>MRC-LMB all gold grid</details>
               </grid>
               <vitrification>
                  <cryogen_name>ETHANE</cryogen_name>
                  <chamber_humidity units="percentage">100</chamber_humidity>
                  <instrument>FEI VITROBOT MARK III</instrument>
               </vitrification>
            </single_particle_preparation>
         </specimen_preparation_list>
         <microscopy_list>
            <single_particle_microscopy microscopy_id="1">
               <microscope>FEI POLARA 300</microscope>
               <illumination_mode>FLOOD BEAM</illumination_mode>
               <imaging_mode>BRIGHT FIELD</imaging_mode>
               <electron_source>FIELD EMISSION GUN</electron_source>
               <acceleration_voltage units="kV">300</acceleration_voltage>
               <specimen_holder_model>OTHER</specimen_holder_model>
               <date>2013-03-08</date>
               <image_recording_list>
                  <image_recording>
                     <film_or_detector_model category="CCD">FEI FALCON II (4k x 4k)</film_or_detector_model>
                  </image_recording>
               </image_recording_list>
            </single_particle_microscopy>
         </microscopy_list>
         <singleparticle_processing image_processing_id="1">
            <final_reconstruction>
               <applied_symmetry>
                  <point_group>O</point_group>
               </applied_symmetry>
               <resolution res_type="BY AUTHOR" units="&#8491;">4.7</resolution>
               <resolution_method>OTHER</resolution_method>
               <software_list>
                  <software>
                     <name>RELION</name>
                  </software>
               </software_list>
               <number_images_used>483</number_images_used>
            </final_reconstruction>
         </singleparticle_processing>
      </structure_determination>
   </structure_determination_list>
   <map format="CCP4" size_kbytes="8986">
      <file>emd_2788.map.gz</file>
      <symmetry>
         <space_group>1</space_group>
      </symmetry>
      <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
      <dimensions>
         <col>132</col>
         <row>132</row>
         <sec>132</sec>
      </dimensions>
      <origin>
         <col>0</col>
         <row>0</row>
         <sec>0</sec>
      </origin>
      <spacing>
         <x>132</x>
         <y>132</y>
         <z>132</z>
      </spacing>
      <cell>
         <a units="&#8491;">177.672</a>
         <b units="&#8491;">177.672</b>
         <c units="&#8491;">177.672</c>
         <alpha units="deg">90.0</alpha>
         <beta units="deg">90.0</beta>
         <gamma units="deg">90.0</gamma>
      </cell>
      <axis_order>
         <fast>X</fast>
         <medium>Y</medium>
         <slow>Z</slow>
      </axis_order>
      <statistics>
         <minimum>-0.47435945</minimum>
         <maximum>0.5409019</maximum>
         <average>0.00880841</average>
         <std>0.05253635</std>
      </statistics>
      <pixel_spacing>
         <x units="&#8491;">1.346</x>
         <y units="&#8491;">1.346</y>
         <z units="&#8491;">1.346</z>
      </pixel_spacing>
      <contour_list>
         <contour primary="true">
            <level>0.16</level>
            <source>AUTHOR</source>
         </contour>
      </contour_list>
      <annotation_details>Reconstructed density map of horse spleen apoferritin</annotation_details>
      <details>::::EMDATABANK.org::::EMD-2788::::</details>
   </map>
   <interpretation>
      <modelling_list>
         <modelling>
            <initial_model>
               <access_code>2W0O</access_code>
               <chain>
                  <chain_id>A</chain_id>
               </chain>
               <chain>
                  <chain_id>B</chain_id>
               </chain>
               <chain>
                  <chain_id>C</chain_id>
               </chain>
               <chain>
                  <chain_id>D</chain_id>
               </chain>
               <chain>
                  <chain_id>E</chain_id>
               </chain>
               <chain>
                  <chain_id>F</chain_id>
               </chain>
               <chain>
                  <chain_id>G</chain_id>
               </chain>
               <chain>
                  <chain_id>H</chain_id>
               </chain>
               <chain>
                  <chain_id>I</chain_id>
               </chain>
               <chain>
                  <chain_id>J</chain_id>
               </chain>
               <chain>
                  <chain_id>K</chain_id>
               </chain>
               <chain>
                  <chain_id>L</chain_id>
               </chain>
               <chain>
                  <chain_id>M</chain_id>
               </chain>
               <chain>
                  <chain_id>N</chain_id>
               </chain>
               <chain>
                  <chain_id>O</chain_id>
               </chain>
               <chain>
                  <chain_id>P</chain_id>
               </chain>
               <chain>
                  <chain_id>Q</chain_id>
               </chain>
               <chain>
                  <chain_id>R</chain_id>
               </chain>
               <chain>
                  <chain_id>S</chain_id>
               </chain>
               <chain>
                  <chain_id>T</chain_id>
               </chain>
               <chain>
                  <chain_id>U</chain_id>
               </chain>
               <chain>
                  <chain_id>V</chain_id>
               </chain>
               <chain>
                  <chain_id>W</chain_id>
               </chain>
               <chain>
                  <chain_id>X</chain_id>
               </chain>
            </initial_model>
            <refinement_protocol>FLEXIBLE FIT</refinement_protocol>
            <software_list>
               <software>
                  <name>RefMac</name>
               </software>
            </software_list>
            <refinement_space>REAL</refinement_space>
         </modelling>
      </modelling_list>
      <figure_list>
         <figure>
            <file>emd_2788.png</file>
         </figure>
      </figure_list>
   </interpretation>
</emd>