<emd xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" emdb_id="EMD-2781" version="3.0.1.1" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v3/v3_0_1_1/emdb_relaxed.xsd">
   <admin>
      <current_status>
         <code>REL</code>
         <processing_site>PDBe</processing_site>
      </current_status>
      <sites>
         <deposition>PDBe</deposition>
         <last_processing>PDBe</last_processing>
      </sites>
      <key_dates>
         <deposition>2014-09-05</deposition>
         <header_release>2014-09-24</header_release>
         <map_release>2015-02-18</map_release>
         <update>2016-02-17</update>
      </key_dates>
      <title>Structure of the vacuolar H+-ATPase rotary motor at subnanometer resolution</title>
      <authors_list>
         <author>Rawson S</author>
         <author>Phillips C</author>
         <author>Huss M</author>
         <author>Tiburcy F</author>
         <author>Wieczorek H</author>
         <author>Trinick J</author>
         <author>Harrison MA</author>
         <author>Muench SP</author>
      </authors_list>
      <keywords>Rotary ATPase, vacuolar ATPase</keywords>
   </admin>
   <crossreferences>
      <citation_list>
         <primary_citation>
            <journal_citation published="true">
               <author order="1">Rawson S</author>
               <author order="2">Phillips C</author>
               <author order="3">Huss M</author>
               <author order="4">Tiburcy F</author>
               <author order="5">Wieczorek H</author>
               <author order="6">Trinick J</author>
               <author order="7">Harrison MA</author>
               <author order="8">Muench SP</author>
               <title>Structure of the vacuolar H+-ATPase rotary motor reveals new mechanistic insights.</title>
               <journal>STRUCTURE</journal>
               <volume>23</volume>
               <first_page>461</first_page>
               <last_page>471</last_page>
               <year>2015</year>
               <external_references type="PUBMED">25661654</external_references>
               <external_references type="DOI">doi:10.1016/j.str.2014.12.016</external_references>
            </journal_citation>
         </primary_citation>
      </citation_list>
   </crossreferences>
   <sample>
      <name>Manduca sexta vacuolar ATPase complex</name>
      <supramolecule_list>
         <sample_supramolecule supramolecule_id="1000">
            <name>Manduca sexta vacuolar ATPase complex</name>
            <details>monodisperse</details>
            <oligomeric_state>monomeric</oligomeric_state>
            <number_unique_components>1</number_unique_components>
            <molecular_weight>
               <experimental units="MDa">0.9</experimental>
               <method>mass spec</method>
            </molecular_weight>
         </sample_supramolecule>
         <organelle_or_cellular_component_supramolecule supramolecule_id="1">
            <name synonym="V-ATPase">Vacuolar ATPase</name>
            <number_of_copies>1</number_of_copies>
            <oligomeric_state>monomer</oligomeric_state>
            <recombinant_exp_flag>false</recombinant_exp_flag>
            <natural_source database="NCBI">
               <organism ncbi="7130">Manduca sexta</organism>
               <synonym_organism>tobacco hornworm</synonym_organism>
            </natural_source>
            <molecular_weight>
               <experimental units="MDa">0.9</experimental>
            </molecular_weight>
            <recombinant_expression database="NCBI">
               </recombinant_expression>
         </organelle_or_cellular_component_supramolecule>
      </supramolecule_list>
   </sample>
   <structure_determination_list>
      <structure_determination structure_determination_id="1">
         <method>singleParticle</method>
         <aggregation_state>particle</aggregation_state>
         <specimen_preparation_list>
            <single_particle_preparation preparation_id="1">
               <concentration units="mg/mL">0.025</concentration>
               <buffer>
                  <ph>8.1</ph>
                  <details>150 mM NaCl, 20 mM Tris-HCl, 9.6 mM 2-mercaptoethanol, 0.01% C12E10</details>
               </buffer>
               <grid>
                  <details>400 mesh Quantifoil R2.0/2.0 grids with thin carbon (10 nm) coating, glow discharged in air.</details>
               </grid>
               <vitrification>
                  <cryogen_name>ETHANE</cryogen_name>
                  <chamber_humidity units="percentage">100</chamber_humidity>
                  <chamber_temperature units="K">120</chamber_temperature>
                  <instrument>FEI VITROBOT MARK IV</instrument>
                  <method>Grids were blotted for 7.5 seconds</method>
               </vitrification>
            </single_particle_preparation>
         </specimen_preparation_list>
         <microscopy_list>
            <single_particle_microscopy microscopy_id="1">
               <microscope>FEI TITAN KRIOS</microscope>
               <illumination_mode>FLOOD BEAM</illumination_mode>
               <imaging_mode>BRIGHT FIELD</imaging_mode>
               <electron_source>FIELD EMISSION GUN</electron_source>
               <acceleration_voltage units="kV">300</acceleration_voltage>
               <nominal_cs units="mm">2.7</nominal_cs>
               <nominal_defocus_min units="&#181;m">1.5</nominal_defocus_min>
               <nominal_defocus_max units="&#181;m">5.5</nominal_defocus_max>
               <calibrated_magnification>103704.0</calibrated_magnification>
               <specimen_holder_model>FEI TITAN KRIOS AUTOGRID HOLDER</specimen_holder_model>
               <details>Collected with FEI EPU software</details>
               <date>2014-02-27</date>
               <image_recording_list>
                  <image_recording>
                     <film_or_detector_model category="CCD">FEI FALCON II (4k x 4k)</film_or_detector_model>
                     <number_real_images>1366</number_real_images>
                     <average_electron_dose_per_image units="e/&#8491;^2">60</average_electron_dose_per_image>
                     <details>Each micrograph is sum of 34 frames recorded by direct detector.</details>
                  </image_recording>
               </image_recording_list>
            </single_particle_microscopy>
         </microscopy_list>
         <singleparticle_processing image_processing_id="1">
            <details>Standard procedures in RELION1.3</details>
            <ctf_correction>
               <details>Relion</details>
            </ctf_correction>
            <final_reconstruction>
               <applied_symmetry>
                  <point_group>C1</point_group>
               </applied_symmetry>
               <algorithm>OTHER</algorithm>
               <resolution res_type="BY AUTHOR" units="&#8491;">9.4</resolution>
               <resolution_method>OTHER</resolution_method>
               <software_list>
                  <software>
                     <name>Relion</name>
                  </software>
               </software_list>
               <details>Maximum likelihood in Relion using 3D auto-refine. The particles were handpicked in BOXER</details>
               <number_images_used>6714</number_images_used>
            </final_reconstruction>
         </singleparticle_processing>
      </structure_determination>
   </structure_determination_list>
   <map format="CCP4" size_kbytes="128001">
      <file>emd_2781.map.gz</file>
      <symmetry>
         <space_group>1</space_group>
      </symmetry>
      <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
      <dimensions>
         <col>320</col>
         <row>320</row>
         <sec>320</sec>
      </dimensions>
      <origin>
         <col>0</col>
         <row>0</row>
         <sec>0</sec>
      </origin>
      <spacing>
         <x>320</x>
         <y>320</y>
         <z>320</z>
      </spacing>
      <cell>
         <a units="&#8491;">432.0</a>
         <b units="&#8491;">432.0</b>
         <c units="&#8491;">432.0</c>
         <alpha units="deg">90.0</alpha>
         <beta units="deg">90.0</beta>
         <gamma units="deg">90.0</gamma>
      </cell>
      <axis_order>
         <fast>X</fast>
         <medium>Y</medium>
         <slow>Z</slow>
      </axis_order>
      <statistics>
         <minimum>-2.55582762</minimum>
         <maximum>13.69235134</maximum>
         <average>0.0</average>
         <std>1.0</std>
      </statistics>
      <pixel_spacing>
         <x units="&#8491;">1.35</x>
         <y units="&#8491;">1.35</y>
         <z units="&#8491;">1.35</z>
      </pixel_spacing>
      <contour_list>
         <contour primary="true">
            <level>4.0</level>
            <source>AUTHOR</source>
         </contour>
      </contour_list>
      <annotation_details>V-ATPase reconstruction</annotation_details>
      <details>::::EMDATABANK.org::::EMD-2781::::</details>
   </map>
</emd>