2024-10-16 REL RCSB RCSB RCSB 2022-08-03 2023-04-19 2023-04-19 2024-10-16 National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) UM1-AI144371 United States Vaccine elicited Antibody MU89+S27Y bound to CH848.D949.10.17_N133D_N138T.DS.SOSIP.664 HIV-1 Env trimer Stalls V Acharya P HIV-1 envelope, vaccine-induced antibody, broadly neutralizing antibody, VIRAL PROTEIN-IMMUNE SYSTEM complex Wiehe K Saunders KO Stalls V Cain DW Venkatayogi S Martin Beem JS Berry M Evangelous T Henderson R Hora B Xia SM Jiang C Newman A Bowman C Lu X Bryan ME Bal J Sanzone A Chen H Eaton A Tomai MA Fox CB Tam YK Barbosa C Bonsignori M Muramatsu H Alam SM Montefiori DC Williams WB Pardi N Tian M Weissman D Alt FW Acharya P Haynes BF Mutation-guided vaccine design: A process for developing boosting immunogens for HIV broadly neutralizing antibody induction. Cell Host Microbe US 32 693 709.e7 2024 38670093 doi:10.1016/j.chom.2024.04.006 1934-6069 Wiehe K Saunders KO Stalls V Cain D Venkatayogi S Martin Beem JS Berry M Evangelous T Henderson R Hora B Xia S Jiang C Newman A Bowman C Lu X Bryan ME Bal J Sanzone A Chen H Eaton A Tomai MA Fox CB Tam Y Barbosa C Bonsignori M Muramatsu H Alam SM Montefiori D Williams WB Pardi N Tian M Weisman D Alt FW Acharya P Haynes BF Mutation-Guided Vaccine Design: A Strategy for Developing Boosting Immunogens for HIV Broadly Neutralizing Antibody Induction bioRxiv US 2022 doi:10.1101/2022.11.11.516143v1 2692-8205 8dy6 FULLOVERLAP V3-glycan vaccine induced antibody MU89+S27Y in complex with CH848.D949.10.17_N133D_N138T.DS.SOSIP.664 HIV Env trimer V3-glycan vaccine induced antibody MU89+S27Y in complex with CH848.D949.10.17_N133D_N138T.DS.SOSIP.664 HIV Env trimer 0 1 2 3 Human immunodeficiency virus 1 0.36 Envelope glycoprotein gp160 Human immunodeficiency virus 1 0.07220808599999999
CH848.D949.10.17_N133D_N138T.DS.SOSIP.664 HIV-1
6 Mammalia LEVO MGSLQPLATLYLLGMLVASVLAAENLWVTVYYGVPVWKEAKTTLFCASDARAYEKEVHNVWATHACVPTDPSPQELVLGN VTENFNMWKNDMVDQMHEDIISLWDQSLKPCVKLTPLCVTLICSDATVKTGTVEEMKNCSFNTTTEIRDKEKKEYALFYK PDIVPLSETNNTSEYRLINCNTSACTQACPKVTFEPIPIHYCAPAGYAILKCNDETFNGTGPCSNVSTVQCTHGIRPVVS TQLLLNGSLAEKEIVIRSENLTNNAKIIIVHLHTPVEIVCTRPNNNTRKSVRIGPGQTFYATGDIIGDIKQAHCNISEEK WNDTLQKVGIELQKHFPNKTIKYNQSAGGDMEITTHSFNCGGEFFYCNTSNLFNGTYNGTYISTNSSANSTSTITLQCRI KQIINMWQGVGRCMYAPPIAGNITCRSNITGLLLTRDGGTNSNETETFRPAGGDMRDNWRSELYKYKVVKIEPLGVAPTR CKRRVVGRRRRRRAVGIGAVFLGFLGAAGSTMGAASMTLTVQARNLLSGIVQQQSNLLRAPEAQQHLLKLTVWGIKQLQA RVLAVERYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQ DLLALD MU89+S27Y Heavy Chain Mus musculus 0.016162116 3 Mammalia LEVO MGWSCIILFLVATATGVHSQVQLVQSGAEVKKPGASVKVSCKASGYRFTDHYIHWVRQAPGQGPEWMGWINTSSGRSNFA QKFQGRVTMTRDTSISTAYMELNRLKSDDTAVYYCTTGSWISLYYDSSGYPNFDYWGQGTLVTVT MU89+S27Y Light Chain Mus musculus 0.011464601 3 Mammalia LEVO QSALTQPASVSGSPGQPITISCTGTSYDVGNYDLVSWYQQHPGNAPKYMIYEVTKRPAGISNRFSGSKSGNTASLTISGL QAEDAADYYCCSYAGSSTVIFGGGTKVTVL 2-acetamido-2-deoxy-beta-D-glucopyranose 0.000221208 9 NAG singleParticle particle 1.5 7.4 Quantifoil R1.2/1.3 COPPER 300 CARBON HOLEY GLOW DISCHARGE ETHANE 90 LEICA EM GP FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 2.7 0.7000000000000001 2.5 NITROGEN GATAN K3 (6k x 4k) 1 1801 59.3 1 1002697 FOURIER SPACE 4.32 FSC 0.143 CUT-OFF cryoSPARC 3.2 65441 MAXIMUM LIKELIHOOD cryoSPARC 3.2 MAXIMUM LIKELIHOOD cryoSPARC 3.2 cryoSPARC 3.2 emd_27776.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 320 320 320 0 0 0 320 320 320 345.6 345.6 345.6 90.0 90.0 90.0 X Y Z -0.43932295 2.7434394 0.006073775 0.12829138 1.08 1.08 1.08 1.05 AUTHOR Sharpened map from homogeneous C3 refinement in cryosparc 6UM6 PDB experimental model 8DTO PDB experimental model FLEXIBLE FIT REAL emd_27776_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 320 320 320 0 0 0 320 320 320 345.6 345.6 345.6 90.0 90.0 90.0 X Y Z -0.2104552 1.6095985 0.0091229845 0.12014375 1.08 1.08 1.08 AUTHOR Half B map from homogeneous C3 refinement in cryosparc emd_27776_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 320 320 320 0 0 0 320 320 320 345.6 345.6 345.6 90.0 90.0 90.0 X Y Z -0.21074016 1.5642492 0.00906492 0.12021993 1.08 1.08 1.08 AUTHOR Half A map from homogeneous C3 refinement in cryosparc