2024-06-12 REL RCSB RCSB RCSB 2022-05-22 2022-09-28 2022-09-28 2024-06-12 Not funded New Zealand Characterisation of a Seneca Valley Virus Thermostable Mutant Jayawardena N Bostina M Strauss M Virus, Picornavirus, SVV, Seneca Valley Virus, Oncolytic virus Jayawardena N McCarthy C Wang I Waqqar S Burga LN Strauss M Bostina M Characterisation of a Seneca Valley virus thermostable mutant. Virology US 575 74 82 2022 36084546 doi:10.1016/j.virol.2022.08.015 0042-6822 0922 VIRLAX 8cxp FULLOVERLAP Senecavirus A Senecavirus A 0 1 2 3 4 Senecavirus A Sus scrofa Capsid 150.0 VIRION STRAIN false false Capsid protein VP1 Senecavirus A 0.029092826 1 LEVO STDNAETGVIEAGNTDTDFSGELAAPGSNHTNVKFLFDRSRLLNVIKVLEKDAVFPRPFPTQEGAQQDDGYFCLLTPRPT VASRPATRFGLYANPSGSGVLANTSLDFNFYSLACFTYFRSDLEVTVVSLEPDLEFAVGWFPSGSEYQASSFVYDQLHVP FHFTGRTPRAFASKGGKVSFVLPWNSVSSVLPVRWGGASKLSSATRGLPAHADWGTIYAFVPRPNEKKSTAVKHVAVYIR YKNARAWCPSMLPFRSYKQKMLM A0A649YC68 Capsid protein VP3 Senecavirus A 0.026492084 1 LEVO GPIPTAPRENSLMFLSTLPDDTVPAYGNVRTPPVNYLPGEITDLLQLARIPTLMAFERVPEPVPASDTYVPYVAVPTQFD DRPLISFPITLSDPVYQNTLVGAISSNFANYRGCIQITLTFCGPMMARGKFLLSYSPPNGTQPQTLSEAMQCTYSIWDIG LNSSWTFVVPYISPSDYRETRAITNSVYSADGWFSLHKLTKITLPPDCPQSPCILFFASAGEDYTLRLPVDCNPSYVFH A0A649YC94 VP2 Senecavirus A 0.031718062 1 LEVO DHNTEEMENSADRVTTQTAGNTAINTQSSLGVLCAYVEDPTKSDPPSSSTDQPTTTFTAIDRWYTGRLNSWTKAVKTFSF QAVPLPGAFLSRQGGLNGGAFTATLHRHFLMKCGWQVQVQCNLTQFHQGALLVAMVPETTLDVKPDGKAKSLQELNEEQW VEMSDDYRTGKNMPFQSLGTYYRPPNWTWGPNFINPYQVTVFPHQILNARTSTSVDVNVPYIGETPTQSSETQNSWTLLV MVLVPLDYKEGATTDPEITFSVRPTSPYFNGLRNRYTAGTDEEQ A0A1U9IRU2 VP4 Senecavirus A 0.007393874999999999 1 LEVO GNVQTTSKNDFDSRGNNGNMTFNYYANTYQNSVDFSTSSSASGAGPGNSRGGLAGLLTNFSGILNPLGYLK A0A649YCC5 singleParticle particle 0.34 7.3 Quantifoil R2/1 COPPER 300 GRAPHENE OXIDE CONTINUOUS GLOW DISCHARGE ETHANE 100 277.15 FEI VITROBOT MARK IV FEI TITAN KRIOS OTHER BRIGHT FIELD FIELD EMISSION GUN 300 1.0 1.0 3.0 3.0 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN GATAN K3 BIOQUANTUM (6k x 4k) 68.0 1 211958 3CJI I 2.47 FSC 0.143 CUT-OFF RELION 3.1 113052 NOT APPLICABLE NOT APPLICABLE emd_27066.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 640 640 640 0 0 0 640 640 640 533.12 533.12 533.12 90.0 90.0 90.0 X Y Z -0.7294473 1.1389424 -0.0093693705 0.066666804 0.833 0.833 0.833 0.204 AUTHOR Seneca Valley Virus Thermostable Mutant 3CJI PDB experimental model FLEXIBLE FIT emd_27066_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 640 640 640 0 0 0 640 640 640 533.12 533.12 533.12 90.0 90.0 90.0 X Y Z -0.038191855 0.022448367 -0.0012945196 0.0034396914 0.833 0.833 0.833 AUTHOR Half Map 2 emd_27066_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 640 640 640 0 0 0 640 640 640 533.12 533.12 533.12 90.0 90.0 90.0 X Y Z -0.50754404 0.40907553 -0.017444214 0.048362814 0.833 0.833 0.833 AUTHOR Half Map 1