<emd xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" emdb_id="EMD-2695" version="3.0.1.1" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v3/v3_0_1_1/emdb_relaxed.xsd">
   <admin>
      <current_status>
         <code>REL</code>
         <processing_site>PDBe</processing_site>
      </current_status>
      <sites>
         <deposition>PDBe</deposition>
         <last_processing>PDBe</last_processing>
      </sites>
      <key_dates>
         <deposition>2014-06-27</deposition>
         <header_release>2014-08-06</header_release>
         <map_release>2015-07-15</map_release>
         <update>2016-09-28</update>
      </key_dates>
      <title>Cryo-EM map of Trigger Factor bound to a translating ribosome</title>
      <authors_list>
         <author>Deeng J</author>
         <author>Chan KY</author>
         <author>van der Sluis E</author>
         <author>Bischoff L</author>
         <author>Berninghausen O</author>
         <author>Han W</author>
         <author>Gumbart J</author>
         <author>Schulten K</author>
         <author>Beatrix B</author>
         <author>Beckmann R</author>
      </authors_list>
      <keywords>translation, co-translational protein folding</keywords>
   </admin>
   <crossreferences>
      <citation_list>
         <primary_citation>
            <journal_citation published="true">
               <author order="1">Deeng J</author>
               <author order="2">Chan KY</author>
               <author order="3">van der Sluis E</author>
               <author order="4">Bischoff L</author>
               <author order="5">Berninghausen O</author>
               <author order="6">Han W</author>
               <author order="7">Gumbart J</author>
               <author order="8">Schulten K</author>
               <author order="9">Beatrix B</author>
               <author order="10">Beckmann R</author>
               <title>Dynamic Behavior of Trigger Factor on the ribosome</title>
               <journal>Journal Molecular Biology</journal>
               <volume>428</volume>
               <first_page>3588</first_page>
               <last_page>3602</last_page>
               <year>2016</year>
               <external_references type="PUBMED">27320387</external_references>
               <external_references type="DOI">doi:10.1016/j.jmb.2016.06.007</external_references>
            </journal_citation>
         </primary_citation>
      </citation_list>
      <pdb_list>
         <pdb_reference>
            <pdb_id>4urd</pdb_id>
            <relationship>
               <in_frame>FULLOVERLAP</in_frame>
            </relationship>
         </pdb_reference>
      </pdb_list>
   </crossreferences>
   <sample>
      <name>TnaC-stalled-RNC with Trigger factor</name>
      <supramolecule_list>
         <sample_supramolecule supramolecule_id="1000">
            <name>TnaC-stalled-RNC with Trigger factor</name>
            <oligomeric_state>monomer</oligomeric_state>
            <number_unique_components>2</number_unique_components>
         </sample_supramolecule>
         <complex_supramolecule supramolecule_id="1">
            <name synonym="70S">cytosolic 70S ribosome</name>
            <recombinant_exp_flag>false</recombinant_exp_flag>
            <natural_source database="NCBI">
               <organism ncbi="562">Escherichia coli</organism>
               <strain>KC6</strain>
            </natural_source>
            <recombinant_expression database="NCBI">
               </recombinant_expression>
            <ribosome-details>ribosome-prokaryote: ALL</ribosome-details>
         </complex_supramolecule>
      </supramolecule_list>
      <macromolecule_list>
         <protein_or_peptide macromolecule_id="1">
            <name>Trigger factor</name>
            <natural_source database="NCBI">
               <organism ncbi="562">Escherichia coli</organism>
            </natural_source>
            <molecular_weight>
               <experimental units="MDa">0.048</experimental>
               <theoretical units="MDa">0.048</theoretical>
            </molecular_weight>
            <number_of_copies>1</number_of_copies>
            <oligomeric_state>1</oligomeric_state>
            <recombinant_exp_flag>true</recombinant_exp_flag>
            <recombinant_expression database="NCBI">
               <recombinant_organism ncbi="562">Escherichia coli</recombinant_organism>
            </recombinant_expression>
            <sequence>
               </sequence>
         </protein_or_peptide>
      </macromolecule_list>
   </sample>
   <structure_determination_list>
      <structure_determination structure_determination_id="1">
         <method>singleParticle</method>
         <aggregation_state>particle</aggregation_state>
         <specimen_preparation_list>
            <single_particle_preparation preparation_id="1">
               <buffer>
                  <ph>7.4</ph>
                  <details>20 mM HEPES, 100 mM KOAc, 10 mM Mg(OAc)2, 2 mM DTT</details>
               </buffer>
               <staining>
                  <type>NEGATIVE</type>
                  <details>Cryo-EM</details>
               </staining>
               <grid>
                  <details>Quantifoil R3/3 holey carbon supported grids</details>
               </grid>
               <vitrification>
                  <cryogen_name>ETHANE</cryogen_name>
                  <chamber_humidity units="percentage">100</chamber_humidity>
                  <instrument>FEI VITROBOT MARK III</instrument>
                  <method>Blot for 10 seconds before plunging, use 2 layers of filter paper V</method>
               </vitrification>
            </single_particle_preparation>
         </specimen_preparation_list>
         <microscopy_list>
            <single_particle_microscopy microscopy_id="1">
               <microscope>FEI TECNAI F30</microscope>
               <illumination_mode>FLOOD BEAM</illumination_mode>
               <imaging_mode>BRIGHT FIELD</imaging_mode>
               <electron_source>FIELD EMISSION GUN</electron_source>
               <acceleration_voltage units="kV">300</acceleration_voltage>
               <nominal_cs units="mm">2.0</nominal_cs>
               <nominal_defocus_min units="&#181;m">-1.2</nominal_defocus_min>
               <nominal_defocus_max units="&#181;m">-3.5</nominal_defocus_max>
               <nominal_magnification>39000.0</nominal_magnification>
               <calibrated_magnification>38900.0</calibrated_magnification>
               <specimen_holder_model>OTHER</specimen_holder_model>
               <date>2010-11-21</date>
               <image_recording_list>
                  <image_recording>
                     <film_or_detector_model category="FILM">KODAK SO-163 FILM</film_or_detector_model>
                     <digitization_details>
                        <scanner>OTHER</scanner>
                        <sampling_interval units="&#181;m">4.35</sampling_interval>
                     </digitization_details>
                     <number_real_images>221</number_real_images>
                     <average_electron_dose_per_image units="e/&#8491;^2">20</average_electron_dose_per_image>
                     <od_range>1.2</od_range>
                     <bits_per_pixel>16.</bits_per_pixel>
                  </image_recording>
               </image_recording_list>
            </single_particle_microscopy>
         </microscopy_list>
         <singleparticle_processing image_processing_id="1">
            <details>The particles were selected using SIGNATURE and processed using SPIDER</details>
            <ctf_correction>
               <details>on volumes (SPIDER)</details>
            </ctf_correction>
            <final_reconstruction>
               <applied_symmetry>
                  <point_group>C1</point_group>
               </applied_symmetry>
               <algorithm>OTHER</algorithm>
               <resolution res_type="BY AUTHOR" units="&#8491;">7.7</resolution>
               <resolution_method>OTHER</resolution_method>
               <software_list>
                  <software>
                     <name>SPIDER</name>
                  </software>
               </software_list>
               <number_images_used>100931</number_images_used>
            </final_reconstruction>
         </singleparticle_processing>
      </structure_determination>
   </structure_determination_list>
   <map format="CCP4" size_kbytes="99268">
      <file>emd_2695.map.gz</file>
      <symmetry>
         <space_group>1</space_group>
      </symmetry>
      <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
      <dimensions>
         <col>294</col>
         <row>294</row>
         <sec>294</sec>
      </dimensions>
      <origin>
         <col>-147</col>
         <row>-147</row>
         <sec>-146</sec>
      </origin>
      <spacing>
         <x>294</x>
         <y>294</y>
         <z>294</z>
      </spacing>
      <cell>
         <a units="&#8491;">363.82498</a>
         <b units="&#8491;">363.82498</b>
         <c units="&#8491;">363.82498</c>
         <alpha units="deg">90.0</alpha>
         <beta units="deg">90.0</beta>
         <gamma units="deg">90.0</gamma>
      </cell>
      <axis_order>
         <fast>Y</fast>
         <medium>X</medium>
         <slow>Z</slow>
      </axis_order>
      <statistics>
         <minimum>-0.30618721</minimum>
         <maximum>0.65773547</maximum>
         <average>0.00660606</average>
         <std>0.04793993</std>
      </statistics>
      <pixel_spacing>
         <x units="&#8491;">1.2375</x>
         <y units="&#8491;">1.2375</y>
         <z units="&#8491;">1.2375</z>
      </pixel_spacing>
      <contour_list>
         <contour primary="true">
            <level>0.09</level>
            <source>EMDB</source>
         </contour>
      </contour_list>
      <annotation_details>High resolution map of ribosome-bound Trigger Factor</annotation_details>
      <details>::::EMDATABANK.org::::EMD-2695::::</details>
   </map>
</emd>