2023-05-17 REL RCSB RCSB RCSB 2022-04-29 2023-02-22 2023-02-22 2023-05-17 National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) GM133498 United States National Institutes of Health/National Cancer Institute (NIH/NCI) CA253730 United States National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) GM139514 United States National Institutes of Health/National Cancer Institute (NIH/NCI) CA010305 United States KDM2B-nucleosome complex stabilized by H3K36C-UNC8015 covalent conjugate Spangler CJ Skrajna A Foley CA Budziszewski GR Azzam DN James LI Frye SV McGinty RK Spangler CJ Skrajna A Foley CA Nguyen A Budziszewski GR Azzam DN Arteaga EC Simmons HC Smith CB Wesley NA Wilkerson EM McPherson JE Kireev D James LI Frye SV Goldfarb D McGinty RK Structural basis of paralog-specific KDM2A/B nucleosome recognition. Nat.Chem.Biol. US 19 624 632 2023 36797403 doi:10.1038/s41589-023-01256-y 1552-4469 EMD-26810 associated EM volume EMD-26809 other EM volume KDM2B-nucleosome complex stabilized by H3K36C-UNC8015 covalent conjugate KDM2B-nucleosome complex stabilized by H3K36C-UNC8015 covalent conjugate 0 1 2 3 4 5 6 7 Homo sapiens 0.32 human histone H3 Homo sapiens Escherichia coli BL21(DE3) LEVO ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVCKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLAAIHAKRVTIMPKDIQLARRIRGERA human histone H4 Homo sapiens Escherichia coli BL21(DE3) LEVO SGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG human histone H2A Homo sapiens Escherichia coli BL21(DE3) LEVO SGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESHHKAKGK human histone H2B Homo sapiens Escherichia coli BL21(DE3) LEVO PEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK DNA 185-MER synthetic construct ATCCCTATACGCGGCCGCCCTGGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTTAAACGCACGTACGCGCTGTCCCCCGCGTTTTAACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATCCTGTGCATGTATTGAACAGCGAT DNA DNA 185-MER synthetic construct ATCGCTGTTCAATACATGCACAGGATGTATATATCTGACACGTGCCTGGAGACTAGGGAGTAATCCCCTTGGCGGTTAAAACGCGGGGGACAGCGCGTACGTGCGTTTAAGCGGTGCTAGAGCTGTCTACGACCAATTGAGCGGCCTCGGCACCGGGATTCTCCAGGGCGGCCGCGTATAGGGAT DNA Lysine-specific demethylase 2B (KDM2B) Homo sapiens Escherichia coli BL21(DE3) LEVO GSEPEEERIRYSQRLRGTMRRRYEDDGISDDEIEGKRTFDLEEKLHTNKYNANFVTFMEGKDFNVEYIQRGGLRDPLIFKNSDGLGIKMPDPDFTVNDVKMCVGSRRMVDVMDVNTQKGIEMTMAQWTRYYETPEEEREKLYNVISLEFSHTRLENMVQRPSTVDFIDWVDNMWPRHLKESQTESTNAILEMQYPKVQKYCLMSVRGCYTDFHVDFGGTSVWYHIHQGGKVFWLIPPTAHNLELYENWLLSGKQGDIFLGDRVSDCQRIELKQGYTFVIPSGWIHAVYTPTDTLVFGGNFLHSFNIPMQLKIYNIEDRTRVPNKFRYPFYYEMCWYVLERYVYCITNRSHLTKEFQKESLSMDLELNGLESGNGDEEAVDREPRRLSSRRSVLTSPVANGVNLDYDGLGKTCRSLPSLKKTLAGDSSSDCSRGSHNGQVWDPQCAPRKDRQVHLTHFELEGLRCLVDKLESLPLHKKCVPTGIEDEDALIADVKILLEELANSDPKLALTGVPIVQWPKRDKLKFPTRPKVRVPTIPITKPHTMKPAPRLTPVRPAAASPIVSGARRRRVRCRKCKACVQGECGVCHYCRDMKKFGGPGRMKQSCVLRQCLAPRLPHSVTCSLCGEVDQNEETQDFEKKLMECCICNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQEDSSEKAQHHHHHH singleParticle particle 1 7.5 10.0 C8H18N2O4S HEPES 30.0 NaCl sodium chloride ETHANE-PROPANE 100 277 FEI VITROBOT MARK IV FEI TALOS ARCTICA FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 200 0.5 3.0 45000.0 FEI TITAN KRIOS AUTOGRID HOLDER GATAN K3 BIOQUANTUM (6k x 4k) 1 15671 45.0 1 3435247 7JO9 3.6 FSC 0.143 CUT-OFF RELION 3.1 47729 MAXIMUM LIKELIHOOD RELION 3.1 MAXIMUM LIKELIHOOD RELION 3.1 emd_26810.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 330 330 330 0 0 0 330 330 330 300.30002 300.30002 300.30002 90.0 90.0 90.0 X Y Z -0.03936551 0.07742096 0.0001535887 0.001865464 0.91 0.91 0.91 0.018 AUTHOR KDM2B-nucleosome complex stabilized by H3K36C-UNC8015 covalent conjugate 7JO9 REAL emd_26810_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 330 330 330 0 0 0 330 330 330 300.30002 300.30002 300.30002 90.0 90.0 90.0 X Y Z -0.005199628 0.027526116 -2.780506e-07 0.0013650281 0.91 0.91 0.91 AUTHOR KDM2B-nucleosome complex stabilized by H3K36C-UNC8015 covalent conjugate half map 2 emd_26810_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 330 330 330 0 0 0 330 330 330 300.30002 300.30002 300.30002 90.0 90.0 90.0 X Y Z -0.0050512566 0.027624246 -3.0024955e-07 0.0013636133 0.91 0.91 0.91 AUTHOR KDM2B-nucleosome complex stabilized by H3K36C-UNC8015 covalent conjugate half map 1