<emd emdb_id="EMD-2675" version="3.0.1.1" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v3/v3_0_1_1/emdb_relaxed.xsd">
    <admin>
        <current_status>
            <code>REL</code>
            <processing_site>PDBe</processing_site>
        </current_status>
        <sites>
            <deposition>PDBe</deposition>
            <last_processing>PDBe</last_processing>
        </sites>
        <key_dates>
            <deposition>2014-06-12</deposition>
            <header_release>2014-07-23</header_release>
            <map_release>2014-08-06</map_release>
            <update>2016-02-17</update>
        </key_dates>
        <title>Cryo-EM map of CAP-Gly-microtubule complex</title>
        <authors_list>
            <author>Wang Q</author>
            <author>Crevenna AH</author>
            <author>Kunze I</author>
            <author>Mizuno N</author>
        </authors_list>
        <keywords>microtubule, dynactin, +TIPs, p150, CAP-Gly</keywords>
    </admin>
    <crossreferences>
        <citation_list>
            <primary_citation>
                <journal_citation published="true">
                    <author order="1">Wang Q</author>
                    <author order="2">Crevenna AH</author>
                    <author order="3">Kunze I</author>
                    <author order="4">Mizuno N</author>
                    <title>Structural basis for the extended CAP-Gly domains of p150(glued) binding to microtubules and the implication for tubulin dynamics.</title>
                    <journal>PROC.NATL.ACAD.SCI.USA</journal>
                    <volume>111</volume>
                    <first_page>11347</first_page>
                    <last_page>11352</last_page>
                    <year>2014</year>
                    <external_references type="PUBMED">25059720</external_references>
                    <external_references type="DOI">doi:10.1073/pnas.1403135111</external_references>
                </journal_citation>
            </primary_citation>
        </citation_list>
    </crossreferences>
    <sample>
        <name>Microtubule complexed with p150glued (25-144)</name>
        <supramolecule_list>
            <sample_supramolecule supramolecule_id="1000">
                <name>Microtubule complexed with p150glued (25-144)</name>
                <oligomeric_state>One CAP-Gly bound to tubulin monomer</oligomeric_state>
                <number_unique_components>1</number_unique_components>
            </sample_supramolecule>
        </supramolecule_list>
        <macromolecule_list>
            <protein_or_peptide macromolecule_id="1">
                <name synonym="dynactin1">p150glued, microtubule</name>
                <natural_source database="NCBI">
                    <organism ncbi="9606">Homo sapiens</organism>
                    <synonym_organism>Human</synonym_organism>
                </natural_source>
                <molecular_weight>
                    <experimental units="MDa">0.013</experimental>
                    <theoretical units="MDa">0.013</theoretical>
                </molecular_weight>
                <oligomeric_state>polymer</oligomeric_state>
                <recombinant_exp_flag>true</recombinant_exp_flag>
                <recombinant_expression database="NCBI">
                    <recombinant_organism ncbi="469008">Escherichia coli BL21(DE3)</recombinant_organism>
                    <recombinant_strain>gold</recombinant_strain>
                    <recombinant_plasmid>pEC vector</recombinant_plasmid>
                </recombinant_expression>
                <sequence>
                    <external_references type="UNIPROTKB">Q14203</external_references>
                    <external_references type="INTERPRO">IPR000938</external_references>
                    <external_references type="INTERPRO">IPR022157</external_references>
                </sequence>
            </protein_or_peptide>
        </macromolecule_list>
    </sample>
    <structure_determination_list>
        <structure_determination structure_determination_id="1">
            <method>helical</method>
            <aggregation_state>filament</aggregation_state>
            <specimen_preparation_list>
                <helical_preparation preparation_id="1">
                    <concentration units="mg/mL">0.2</concentration>
                    <buffer>
                        <ph>6.8</ph>
                        <details>80 mM Pipes, 1 mM MgCl2, 1 mM EGTA</details>
                    </buffer>
                    <grid>
                        <details>300 mesh Quantifoil grid, glow discharged</details>
                    </grid>
                    <vitrification>
                        <cryogen_name>ETHANE-PROPANE MIXTURE</cryogen_name>
                        <chamber_humidity units="percentage">90</chamber_humidity>
                        <instrument>FEI VITROBOT MARK IV</instrument>
                        <method>Blot for 5 seconds with force 2, before plunging</method>
                    </vitrification>
                </helical_preparation>
            </specimen_preparation_list>
            <microscopy_list>
                <helical_microscopy microscopy_id="1">
                    <microscope>FEI TECNAI 20</microscope>
                    <illumination_mode>FLOOD BEAM</illumination_mode>
                    <imaging_mode>BRIGHT FIELD</imaging_mode>
                    <electron_source>FIELD EMISSION GUN</electron_source>
                    <acceleration_voltage units="kV">200</acceleration_voltage>
                    <nominal_defocus_min units="&#181;m">1.0</nominal_defocus_min>
                    <nominal_defocus_max units="&#181;m">3.0</nominal_defocus_max>
                    <nominal_magnification>50000.0</nominal_magnification>
                    <calibrated_magnification>67873.0</calibrated_magnification>
                    <specimen_holder_model>GATAN LIQUID NITROGEN</specimen_holder_model>
                    <alignment_procedure>
                        <legacy>
                            <astigmatism>Objective lens astigmatism was corrected at 120,000 times magnification</astigmatism>
                        </legacy>
                    </alignment_procedure>
                    <date>2012-04-27</date>
                    <image_recording_list>
                        <image_recording>
                            <film_or_detector_model category="CCD">FEI EAGLE (4k x 4k)</film_or_detector_model>
                            <number_real_images>160</number_real_images>
                            <average_electron_dose_per_image units="e/&#8491;^2">20</average_electron_dose_per_image>
                        </image_recording>
                    </image_recording_list>
                </helical_microscopy>
            </microscopy_list>
            <helical_processing image_processing_id="1">
                <details>The particles were aligned using SPIDER and helical symmetry was applied using IHRSR.</details>
                <final_reconstruction>
                    <applied_symmetry>
                        <helical_parameters>
                            <delta_z units="&#8491;">2.98</delta_z>
                            <delta_phi units="deg">129</delta_phi>
                            <axial_symmetry>C1</axial_symmetry>
                        </helical_parameters>
                    </applied_symmetry>
                    <algorithm>OTHER</algorithm>
                    <resolution res_type="BY AUTHOR" units="&#8491;">12.0</resolution>
                    <resolution_method>OTHER</resolution_method>
                    <software_list>
                        <software>
                            <name>Spider, EMAN, IHRSR, bsoft</name>
                        </software>
                    </software_list>
                </final_reconstruction>
                <ctf_correction>
                    <details>Phases of individual images are flipped.</details>
                </ctf_correction>
            </helical_processing>
        </structure_determination>
    </structure_determination_list>
    <map format="CCP4" size_kbytes="662">
        <file>emd_2675.map.gz</file>
        <symmetry>
            <space_group>1</space_group>
        </symmetry>
        <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
        <dimensions>
            <col>47</col>
            <row>60</row>
            <sec>60</sec>
        </dimensions>
        <origin>
            <col>0</col>
            <row>0</row>
            <sec>0</sec>
        </origin>
        <spacing>
            <x>60</x>
            <y>47</y>
            <z>60</z>
        </spacing>
        <cell>
            <a units="&#8491;">103.87</a>
            <b units="&#8491;">132.6</b>
            <c units="&#8491;">132.6</c>
            <alpha units="deg">90.0</alpha>
            <beta units="deg">90.0</beta>
            <gamma units="deg">90.0</gamma>
        </cell>
        <axis_order>
            <fast>X</fast>
            <medium>Y</medium>
            <slow>Z</slow>
        </axis_order>
        <statistics>
            <minimum>-26.033224109999999</minimum>
            <maximum>32.615108489999997</maximum>
            <average>1.0</average>
            <std>10.0</std>
        </statistics>
        <pixel_spacing>
            <x units="&#8491;">2.21</x>
            <y units="&#8491;">2.21</y>
            <z units="&#8491;">2.21</z>
        </pixel_spacing>
        <contour_list>
            <contour primary="true">
                <level>2.0</level>
                <source>AUTHOR</source>
            </contour>
        </contour_list>
        <annotation_details>Reconstruction of p150glued(25-144) and microtubule, filtered to 12 angstrom for the visualization of the decoration.</annotation_details>
        <details>::::EMDATABANK.org::::EMD-2675::::</details>
    </map>
</emd>