2024-11-06 REL RCSB RCSB RCSB 2022-03-31 2022-10-05 2022-10-05 2024-11-06 National Health and Medical Research Council (NHMRC, Australia) GNT1184012 Australia Bacteriophage Lambda Red-Beta N-terminal domain helical assembly in complex with dsDNA Newing TP Tolun G Annealase, Synaptase, SSAP, Single-strand annealing protein, DNA annealing intermediate, Recombinase, Two-component recombinase, Viral, DNA-binding, RECOMBINATION-DNA complex Newing TP Brewster JL Fitschen LJ Bouwer JC Johnston NP Yu H Tolun G Red beta 177 annealase structure reveals details of oligomerization and lambda Red-mediated homologous DNA recombination Nat Commun UK 13 5649 2022 36163171 doi:10.1038/s41467-022-33090-6 2041-1723 7ujl FULLOVERLAP RedBeta177 oligomeric helical assembly bound to two complementary 27mer ssDNA oligonucleotides RedBeta177 oligomeric helical assembly bound to two complementary 27mer ssDNA oligonucleotides 0 1 2 3
Helical complex assembled through sequential addition of complementary oligonucleotides in a controlled environment
102.26 Red-beta annealase N-terminal domain 1 1 Escherichia virus Lambda Template ssDNA 1 2
27mer ssDNA oligonucleotide
Escherichia coli Complementary ssDNA 1 3
27mer ssDNA oligonucleotide
Escherichia coli Recombination protein bet Escherichia virus Lambda 0.021275008 1 Escherichia coli BL21(DE3) LEVO MSTALATLAGKLAERVGMDSVDPQELITTLRQTAFKGDASDAQFIALLIVANQYGLNPWTKEIYAFPDKQNGIVPVVGVD GWSRIINENQQFDGMDFEQDNESCTCRIYRKDRNHPICVTEWMDECRREPFKTREGREITGPWQSHPKRMLRHKAMIQCA RLAFGFAGIYDKDEAERSSHHHHHH P03698 Template DNA Escherichia coli 0.008244295 1 (DT)(DG)(DC)(DA)(DG)(DC)(DA)(DG)(DC)(DT)(DT)(DT)(DA)(DC)(DC)(DA)(DT)(DC)(DT)(DG) (DC)(DC)(DG)(DC)(DT)(DG)(DG) DNA Complementary DNA Escherichia coli 0.008351386 1 (DC)(DC)(DA)(DG)(DC)(DG)(DG)(DC)(DA)(DG)(DA)(DT)(DG)(DG)(DT)(DA)(DA)(DA)(DG)(DC) (DT)(DG)(DC)(DT)(DG)(DC)(DA) DNA helical helicalArray 2.6 6.0 20.0 KH2PO4 potassium phosphate 5.0 MgCl2 magnesium chloride Quantifoil R1.2/1.3 GOLD 300 GOLD HOLEY 50.0 GLOW DISCHARGE ETHANE 100 298 FEI VITROBOT MARK IV
Sample loading volume ranged between 2 and 3 microlitres. Samples were blotted for 5 seconds prior to vitrification..
FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 2.7 0.5 2.5 59500.0 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN GIF Quantum LS
Installed but not used
 GATAN K2 SUMMIT (4k x 4k) COUNTING 3838 3710 1-50 1 4710 9.0 50.0 1 2 2.078 -12.947 C1 FOURIER SPACE 3.3 FSC 0.143 CUT-OFF cryoSPARC 3.0 26525 922280 cryoSPARC 3.0
922280 particles were initially selected using cryoSPARC filament tracing
 MAXIMUM LIKELIHOOD cryoSPARC 3.0 emd_26566.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 448 448 448 0 0 0 448 448 448 376.31998 376.31998 376.31998 90.0 90.0 90.0 X Y Z -0.75450426 1.4613495 0.012436662 0.08833565 0.84 0.84 0.84 0.265 AUTHOR Symmetrised, sharpened map of the RedBeta177 helical assembly bound to dsDNA FLEXIBLE FIT Correlation coefficient REAL emd_26566_msk_1.map emd_26566_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 448 448 448 0 0 0 448 448 448 376.31998 376.31998 376.31998 90.0 90.0 90.0 X Y Z -1.2999195 1.3187453 0.00017248016 0.15599047 0.84 0.84 0.84 AUTHOR Unfiltered half map A of the RedBeta177 helical assembly bound to dsDNA emd_26566_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 448 448 448 0 0 0 448 448 448 376.31998 376.31998 376.31998 90.0 90.0 90.0 X Y Z -1.3309789 1.3130921 0.000055069784 0.15598729 0.84 0.84 0.84 AUTHOR Unfiltered half map B of the RedBeta177 helical assembly bound to dsDNA