<emd xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" emdb_id="EMD-2650" version="3.0.1.1" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v3/v3_0_1_1/emdb_relaxed.xsd">
   <admin>
      <current_status>
         <code>REL</code>
         <processing_site>PDBe</processing_site>
      </current_status>
      <sites>
         <deposition>PDBe</deposition>
         <last_processing>PDBe</last_processing>
      </sites>
      <key_dates>
         <deposition>2014-05-14</deposition>
         <header_release>2014-05-28</header_release>
         <map_release>2014-07-16</map_release>
         <update>2015-07-15</update>
      </key_dates>
      <title>Structure of the mammalian ribosome-Sec61 complex</title>
      <authors_list>
         <author>Voorhees RM</author>
         <author>Fernandez IS</author>
         <author>Scheres SHW</author>
         <author>Hegde R</author>
      </authors_list>
      <keywords>translation, ribosome, mammalian, sec61</keywords>
   </admin>
   <crossreferences>
      <citation_list>
         <primary_citation>
            <journal_citation published="true">
               <author order="1">Voorhees RM</author>
               <author order="2">Fernandez IS</author>
               <author order="3">Scheres SHW</author>
               <author order="4">Hegde RS</author>
               <title>Structure of the mammalian ribosome-Sec61 complex at 3.4A resoultion</title>
               <journal>CELL(CAMBRIDGE,MASS.)</journal>
               <volume>157</volume>
               <first_page>1632</first_page>
               <last_page>1643</last_page>
               <year>2014</year>
               <external_references type="PUBMED">24930395</external_references>
               <external_references type="DOI">doi:10.1016/j.cell.2014.05.024</external_references>
            </journal_citation>
         </primary_citation>
      </citation_list>
      <pdb_list>
         <pdb_reference>
            <pdb_id>3j7q</pdb_id>
            <relationship>
               <in_frame>FULLOVERLAP</in_frame>
            </relationship>
         </pdb_reference>
      </pdb_list>
   </crossreferences>
   <sample>
      <name>Mammalian ribosome in complex with Sec61 in a idle configuration with the large subunit (60S) masked during processing.</name>
      <supramolecule_list>
         <sample_supramolecule supramolecule_id="1000">
            <name>Mammalian ribosome in complex with Sec61 in a idle configuration with the large subunit (60S) masked during processing.</name>
            <number_unique_components>2</number_unique_components>
         </sample_supramolecule>
         <complex_supramolecule supramolecule_id="1">
            <name>Mammalian ribosome</name>
            <recombinant_exp_flag>false</recombinant_exp_flag>
            <natural_source database="NCBI">
               <organism ncbi="9825">Sus scrofa domesticus</organism>
               <synonym_organism>Domestic Pig</synonym_organism>
               <tissue>pancreas</tissue>
            </natural_source>
            <recombinant_expression database="NCBI">
               </recombinant_expression>
            <ribosome-details>ribosome-eukaryote: ALL</ribosome-details>
         </complex_supramolecule>
      </supramolecule_list>
      <macromolecule_list>
         <protein_or_peptide macromolecule_id="1">
            <name>Sec61</name>
            <natural_source database="NCBI">
               <organism ncbi="9825">Sus scrofa domesticus</organism>
               <synonym_organism>Domestic Pig</synonym_organism>
            </natural_source>
            <recombinant_exp_flag>false</recombinant_exp_flag>
            <recombinant_expression database="NCBI">
               </recombinant_expression>
            <sequence>
               </sequence>
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      </macromolecule_list>
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               <buffer>
                  <ph>7.5</ph>
                  <details>50mM HEPES, 200mM K-acetate, 15mM Mg-acetate, 1mM DTT</details>
               </buffer>
               <grid>
                  <details>Quantifoil R2/2 400 mesh copper grids.</details>
               </grid>
               <vitrification>
                  <cryogen_name>ETHANE</cryogen_name>
                  <chamber_humidity units="percentage">90</chamber_humidity>
                  <chamber_temperature units="K">120</chamber_temperature>
                  <instrument>FEI VITROBOT MARK IV</instrument>
                  <method>3uL of sampled was incubated on the grid for 30 seconds before blotting for 9 second</method>
               </vitrification>
            </single_particle_preparation>
         </specimen_preparation_list>
         <microscopy_list>
            <single_particle_microscopy microscopy_id="1">
               <microscope>FEI TITAN KRIOS</microscope>
               <illumination_mode>OTHER</illumination_mode>
               <imaging_mode>BRIGHT FIELD</imaging_mode>
               <electron_source>FIELD EMISSION GUN</electron_source>
               <acceleration_voltage units="kV">300</acceleration_voltage>
               <nominal_defocus_min units="&#181;m">0.001</nominal_defocus_min>
               <nominal_defocus_max units="&#181;m">0.003</nominal_defocus_max>
               <nominal_magnification>47000.0</nominal_magnification>
               <specimen_holder_model>FEI TITAN KRIOS AUTOGRID HOLDER</specimen_holder_model>
               <date>2014-04-07</date>
               <image_recording_list>
                  <image_recording>
                     <film_or_detector_model category="CCD">FEI FALCON II (4k x 4k)</film_or_detector_model>
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                     <average_electron_dose_per_image units="e/&#8491;^2">25</average_electron_dose_per_image>
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               <details>Each particle</details>
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                  <point_group>C1</point_group>
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               <resolution_method>OTHER</resolution_method>
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                     <name>Relion</name>
                  </software>
               </software_list>
               <number_images_used>80019</number_images_used>
            </final_reconstruction>
         </singleparticle_processing>
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      <file>emd_2650.map.gz</file>
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         <col>420</col>
         <row>420</row>
         <sec>420</sec>
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         <beta units="deg">90.0</beta>
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         <slow>Z</slow>
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         <contour primary="true">
            <level>0.09</level>
            <source>AUTHOR</source>
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      <annotation_details>Final map for mammalian ribosome in complex with Sec61 in idle configuration with the large subunit masked along refinement</annotation_details>
      <details>::::EMDATABANK.org::::EMD-2650::::</details>
   </map>
</emd>