2024-02-14 REL RCSB RCSB RCSB 2022-03-09 2022-07-06 2022-07-06 2024-02-14 Canadian Institutes of Health Research (CIHR) PJT166152 Canada Canadian Institutes of Health Research (CIHR) FDN-143202 Canada Canadian Institutes of Health Research (CIHR) FDN-143301 Canada Ministry of Education (MoE, Singapore) Singapore Structure of porcine kidney V-ATPase with SidK, Rotary State 3 Tan YZ proton translocation, complex, MEMBRANE PROTEIN Tan YZ Abbas YM Wu JZ Wu D Keon KA Hesketh GG Bueler SA Gingras AC Robinson CV Grinstein S Rubinstein JL CryoEM of endogenous mammalian V-ATPase interacting with the TLDc protein mEAK-7. Life Sci Alliance US 5 2022 35794005 doi:10.26508/lsa.202201527 2575-1077 7u8r FULLOVERLAP Porcine kidney V-ATPase with SidK, Rotary State 3 Porcine kidney V-ATPase with SidK, Rotary State 3 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 Sus scrofa V-type proton ATPase catalytic subunit A Sus scrofa 0.068393844 3 LEVO MDFSKLPKILDEDKESTFGYVHGVSGPVVTACDMAGAAMYELVRVGHSELVGEIIRLEGDMATIQVYEETSGVSVGDPVL RTGKPLSVELGPGIMGAIFDGIQRPLSDISSQTQSIYIPRGVNVSALSRDVKWEFTPSKNLRVGSHITGGDIYGIVNENS LIKHRIMLPPRNRGTVTYIAPPGNYDTSDVVLELEFEGVKEKFSMVQVWPVRQVRPVTEKLPANHPLLTGQRVLDALFPC VQGGTTAIPGAFGCGKTVISQSLSKYSNSDVIIYVGCGERVNEMSEVLRDFPELTMEVDGKVESIMKRTALVANTSNMPV AAREASIYTGITLSEYFRDMGYHVSMMANSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNPER EGSVTIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSVNWLISYSKYMRALDEYYDKHFTEFVPLRTKAK EILQEEEDLAEIVQLVGKASLAETDKITLEVAKLIKDDFLQQNGYTPYDRFCPFYKTVGMLSNMIAFYDLARRAVETTAQ SDNKITWSIIREHMGEILYKLSSMKFKDPVKDGEAKIKADYAQLLEDVQNAFRSLED Q29048 7.1.2.2 Vacuolar proton pump subunit B Sus scrofa 0.057162858999999996 3 LEVO MAMKVDSRPGGLPSSGSHLGTAREHVQAVTRNYITHPRVTYRTVCSVNGPLVVLDHVKFAQYAEIVNFTLPNGTQRSGQV LEVSGTKAIVQVFEGTSGIDAQKTTCEFTGDILRTPVSEDMLGRVFNGSGKPIDNGPVVMAEDFLDINGQPINPHDRIYP EEMIQTGISPIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKKSKAVLDYDDDNFAIVFAAMGVNMETARFFKS DFEENGTMGNVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGY MYTDLATIYERAGRVEGRGGSITQIPILTMPNDDITHPIPDLTGFITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAI GEGMTRKDHGDVSNQLYACYAIGKDVQAMKAVVGEEALTSEDLLYLEFLQKFERNFINQGPYEKRSVFESLDLGWKLLRI FPKEMLKRIPQSMIDEFYSREGAPQDPEPEPDTAL A0A4X1W9K3 V-type proton ATPase subunit C Sus scrofa 0.044066565999999995 1 LEVO MTEFWLISAPGEKTCQQTWEKLHAATTKNNNLALTSKFNIPDLKVGTLDVLVGLSDELAKLDAFVEGVVKKVAQYMADVL EDSRDKVQENLLANGVDLVTYITRFQWDMAKYPIKQSLKNISEIIAKGVTQIDNDLKSRASAYNNLKGNLQNLERKNAGS LLTRSLAEIVKKDDFVLDSEYLVTLLVVVPKLNHNDWIKQYETLAEMVVPRSSNVLSEDQDSYLCNVTLFRKAVDDFRHK ARENKFIVRDFQYNEEEMKADKEEMNRLSTDKKKQFGPLVRWLKVNFSEAFIAWIHVKALRVFVESVLRYGLPVNFQAML LQPNKKTMKKLREVLYELYKHLDSSAAAIIDAPVDIPGLNLSQQEYYPYVYYKIDCNLLEFK F1S0R4 V-type proton ATPase subunit D Sus scrofa 0.028301901999999997 1 LEVO MSGKDRIEIFPSRMAQTIMKARLKGAQTGRNLLKKKSDALTLRFRQILKKIIETKMLMGEVMREAAFSLAEAKFTAGDFS TTVIQNVNKAQVKIRAKKDNVAGVTLPVFEHYHEGTDSYELTGLARGGEQLAKLKRNYAKAVELLVELASLQTSFVTLDE AIKITNRRVNAIEHVIIPRIERTLAYIITELDEREREEFYRLKKIQEKKKILKEKSEKDLEQRRAAGEAMEPANLLAEEK DEDLLFE A0A286ZJL5 V-type proton ATPase subunit E 1 Sus scrofa 0.026162373 3 LEVO MALSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKKEKQIEQQKKIQMSNLMNQAR LKVLRARDDLITDLLNEAKQRLGKVVKDTTRYQVLLDGLVLQGLYQLLEPRMIVRCRKQDFPLVKAAVQKAIPVYKIATK RDVDVQIDQEAYLPEEIAGGVEIYNGDRKIKVSNTLESRLDLIAQQMMPEVRGALFGANANRKFLD K9J4U3 V-type proton ATPase subunit F Sus scrofa 0.013403288 1 LEVO MAGRGKLIAVIGDEDTVTGFLLGGIGELNKNRHPNFLVVEKDTTINEIEDTFRQFLNREDIGIILINQYIAEMVRHALDA HQRSIPAVLEIPSKEHPYDAAKDSILRRAKGMFTAEDLR F1SMN6 V-type proton ATPase subunit G Sus scrofa 0.013748474 3 LEVO MASQSQGIQQLLQAEKRAAEKVSEARKRKNRRLKQAKEEAQAEIEQYRLQREKEFKAKEAAALGSHGSCSTEVEKDTQEK MTILQTYFRQNRDEVLDNLLAFVCDIRPEIHENYRING A0A4X1UZN2 Bacterial effector protein SidK Legionella pneumophila 0.038539370999999996 3 Escherichia coli LEVO MSFIKVGIKMGGLTSEQYHSQVVGKIGYIARCMQTIDPENNLKKIREDYQDVLIWAEKNYRFEEILEASKSGKCPNDLDA LSRRSLILQELLRLVSSISPFKMKLDLIESQYEKMKQHVNLWKSDYHVKLNQLNQLTDYLKNAAPTPKNNFLRAMTSVLQ MQIAQYGITEDNEGINQLFKLGLHLLAMANEKIDEQYHLFKGYVKDQPEESPFEGILPAEDQKILVKTMIDYAMPKLSSK VLQDKLSALSSSDVLTKTLLDSIDRIVKENEKLNALSKVKLGKFGLDIREIEVIYSQALKISPQDALQYTAQQCDAQLLS MAFPDSQNYIIESISNK Q5ZWW6 V-type proton ATPase subunit H Sus scrofa 0.055917797 1 LEVO MTKMDIRGAVDAAVPTNIIAAKAAEVRANKVNWQSYLQGQMISSEDCEFIQRFEMKRSPEEKQEMLQTEGSQCAKTFINL MTHISKEQTVQYILTMVDDTLQENHQRVSIFFDYAKRSKNTAWSYFLPMLNRQDLFTVHMAARIIAKLAAWGKELMEGSD LNYYFNWIKTQLASQKLRGSGVAVETGTVSSSDSSQYVQCVAGCLQLMLRVNEYRFAWVEADGVNCIMGVLSNKCGFQLQ YQMIFSIWLLAFSPQMCEHLRRYNIIPVLSDILQESVKEKVTRIILAAFRNFLEKSTERETRQEYALALIQCKVLKQLEN LEQQKYDDEDISEDIKFLLEKLGESVQDLSSFDEYSSELKSGRLEWSPVHKSEKFWRENAVRLNEKNYELLKILTKLLEV SDDPQVLAVAAHDVGEYVRHYPRGKRVIEQLGGKQLVMNHMHHEDQQVRYNALLAVQKLMVHNWEYLGKQLQSEQPQTAA ARS Q9TVC1 V-type proton ATPase subunit a Sus scrofa 0.096365258 1 LEVO MGELFRSEEMTLAQLFLQSEAAYCCVSELGELGKVQFRDLNPDVNVFQRKFVNEVRRCEEMDRKLRFVEKEIRKANIPIM DTGENPEVPFPRDMIDLEANFEKIENELKEINTNQEALKRNFLELTELKFILRKTQQFFDEMADPDLLEESSSLLEPNEM GRGTPLRLGFVAGVINRERIPTFERMLWRVCRGNVFLRQAEIENPLEDPVTGDYVHKSVFIIFFQGDQLKNRVKKICEGF RASLYPCPETPQERKEMASGVNTRIDDLQMVLNQTEDHRQRVLQAAAKNIRVWFIKVRKMKAIYHTLNLCNIDVTQKCLI AEVWCPVTDLDSIQFALRRGTEHSGSTVPSILNRMQTNQTPPTYNKTNKFTCGFQNIVDAYGIGTYREINPAPYTIITFP FLFAVMFGDFGHGILMTLFAVWMVLRESRILSQKNENEMFSTVFSGRYIILLMGIFSIYTGLIYNDCFSKSLNIFGSSWS VRPMFDGYNWTEETLRGNPVLQLNPAVLGVFGGPYPFGIDPIWNIATNKLTFLNSFKMKMSVILGIIHMMFGVSLSLFNH IYFKRPLNIYFGFIPEIIFMTSLFGYLVILIFYKWTAYDAQTSEKAPSLLIHFINMFLFSYGDSGNSMLYSGQKGIQCFL VVVALLCVPWMLLIKPLVLRHQYLRRKHLGTLNFGGIRVGNGPTEEDAEIIQHDQLSTHSEDAEEPTEDEVFDFGDTMVH QAIHTIEYCLGCISNTASYLRLWALSLAHAQLSEVLWTMVIHIGLSVKSLAGGLALFFIFAAFATLTVAILLIMEGLSAF LHALRLHWVEFQNKFYSGTGFKFLPFSFEHIREGKFDE A0A4X1U3K4 V-type proton ATPase 21 kDa proteolipid subunit isoform 1 Sus scrofa 0.021530426 1 LEVO MTGLVLLYSGVFVAFWACLLVVGICYTIFDLGFRFDVAWFLTETSPFMWSNLGIGLAISLSVVGAAWGIYITGSSIIGGG VKAPRIKTKNLVSIIFCEAVAIYGIIMAIVISNMAEPFSATDPKAIGHRNYHAGYSMFGAGLTVGLSNLFCGVCVGIVGS GAALADAQNPSLFVKILIVEIFGSAIGLFGVIVAILQTSRVKMGD A0A480L444 ATPase H+ transporting accessory protein 1 Sus scrofa 0.051547464999999994 1 LEVO MMAAAAAARVRAGTRRGPALWQMPWLPLVAVAVVAAASAAEQQVPLVLWSSDRNLWAPAANTHEGHITSDRQLSTYLDPA LELGPRNVLLFLQDKLSVEDFTAYGGVFGNKQDSAFSNLENALDLAPSSLVLPAVDWYAVSTLTTYLQEKLGASPLHVDL ATLRELKLNASLPALLLIRLPYTASSGLMAPKEVLTANDEVIGQVLSTLKSEEVPYTAALTAVRPSRVARDVAMVAGGLG RQLLQRPSASAATHPPVSYNDTAPRILFWAQNFSVAYGGRWEDLTSLTFGVQDLNLTGSFWNDSVAWLALTYDQLFGTMV TFKFILANRFYQVSARHWFTLERLEIHSNGSIASFNASQVTGPSIYSFHCEYVNSHNKNGDLLVPSTQPSLWQLTFQDFQ IQAFNVTGERFSYASDCAGFFSPGIWMGLLTSLFMLFIFTYGLHMILGLKTMDRFDDHKGPTIALTQIV K9IWA3 V-type proton ATPase subunit Sus scrofa 0.040369948999999995 1 LEVO MSFFPELYFNVDNGYLEGLVRGLKAGVLSQADYLNLVQCETLEDLKLHLQSTDYGNFLANEASPLTVSVIDDRLKEKMVV EFRHMRNHAYEPLASFLDFITYSYMIDNVILLITGTLHQRSIAELVPKCHPLGSFEQMEAVNIAQTPAELYNAILVDTPL AAFFQDCISEQDLDEMNIEIIRNTLYKAYLESFYKFCTLLGGTTADAMCPILEFEADRRAFIITINSFGTELSKEDRAKL FPHCGRLYPEGLAQLARADDYEQVKNVADYYPEYKLLFEGAGSNPGDKTLEDRFFEHEVKLNKLAFLNQFHFGVFYAFVK LKEQECRNIVWIAECIAQRHRAKIDNYIPIF A0A4X1UJS8 V-type proton ATPase subunit Sus scrofa 0.009343286 1 LEVO MAYTGLTVPLIVMSVFWGFVGFLVPWFIPKGPNRGVIITMLVTCSVCCYLFWLIAILAQLNPLFGPQLKNETIWYLKYHW P A0A4X1U843 Ribonuclease kappa Sus scrofa 0.011016065 1 LEVO MASLLCCGPKLAACGIVLSAWGVIMLIMLGIFFNVHSAVLIEDVPFTEKDFENGPQDIYKLYEQVSYNCFIAAGLYLLLG GFSFCQVRLNKRKEYMVR A0A480L8C4 V-type proton ATPase proteolipid subunit Sus scrofa 0.015639676999999998 9 LEVO MSEAKSGPEYAAFFAVMGASAAMVFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIANSL TEGISLYKSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALILSTK A0A4X1VUN6 ATPase H(+)-transporting lysosomal accessory protein 2 Sus scrofa 0.039200055 1 LEVO MAVLVALLSLVVAGVLGNEFSILRSPGSVVFRDGNWPIPGERIPDVAALSMGFSVKEDLSWPGLAVGNLFHRPRATVMVM VKGVDKLALPPGSVISYPLENAVPFSLDSVANSIHSLFSEETPVVLQLAPSEERVYMVGKANSVFEDLSVTLRQLRSRLF QENSILSLLPLNSLSRNNEVDLLFLSELQVLHDISSLLSRHKHLAKDHSPDLYSLELAGLDEIGKRYGEDSEQFRDASKI LVDALQKFADDMYNLYGGNAVVELVTVRSFDTSLVRKTRTILEAKQVKDPPSPYNLAYKYNVDYPVVFNMILWIMIALAL AVIITSYNIWNMDPGYDSIIYRMTNQKIRMD A0A287AJK1 ADENOSINE-5'-DIPHOSPHATE 0.000427201 1 ADP singleParticle particle 7.4 ETHANE FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 0.1 3.911445 FEI FALCON IV (4k x 4k) 40.0 1
mEAK7 + V-ATPase + SidK model
 3.8 FSC 0.143 CUT-OFF 22866 OTHER MAXIMUM LIKELIHOOD emd_26388.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 121 141 201 0 0 0 121 141 201 184.88861 215.4487 307.129 90.0 90.0 90.0 X Y Z -0.38918403 2.798913 0.16040607 0.25359786 1.528005 1.528005 1.528005 0.7 AUTHOR Map used for model building. emd_26388_additional_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 300 300 300 0 0 0 300 300 300 458.4015 458.4015 458.4015 90.0 90.0 90.0 X Y Z -1.8412671 3.264527 0.00071615644 0.1259537 1.528005 1.528005 1.528005 AUTHOR V-ATPase with SidK, Rotary State 3 emd_26388_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 300 300 300 0 0 0 300 300 300 458.4015 458.4015 458.4015 90.0 90.0 90.0 X Y Z -1.5135369 2.9018247 0.002403559 0.18338206 1.528005 1.528005 1.528005 AUTHOR V-ATPase with SidK, Rotary State 3 emd_26388_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 300 300 300 0 0 0 300 300 300 458.4015 458.4015 458.4015 90.0 90.0 90.0 X Y Z -1.5157195 2.7923698 0.00230728 0.18357292 1.528005 1.528005 1.528005 AUTHOR V-ATPase with SidK, Rotary State 3