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        <key_dates>
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            <header_release>2023-02-22</header_release>
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            <update>2026-08-12</update>
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        <grant_support>
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                <funding_body>National Institutes of Health/National Cancer Institute (NIH/NCI)</funding_body>
                <country>United States</country>
            </grant_reference>
        </grant_support>
        <title>Structure of mitochondrial bc1 in complex with ck-2-68</title>
        <authors_list>
            <author>Xia D</author>
            <author>Esser L</author>
        </authors_list>
        <keywords>Mitochondrial cytochrome bc1, antimalarial inhibitor, electron transfer, OXIDOREDUCTASE</keywords>
    </admin>
    <crossreferences>
        <citation_list>
            <primary_citation>
                <journal_citation published="true">
                    <author order="1">Esser L</author>
                    <author order="2">Zhou F</author>
                    <author order="3">Zeher A</author>
                    <author order="4">Wu W</author>
                    <author order="5">Huang R</author>
                    <author order="6">Yu CA</author>
                    <author order="7">Lane KD</author>
                    <author order="8">Wellems TE</author>
                    <author order="9">Xia D</author>
                    <title>Structure of complex III with bound antimalarial agent CK-2-68 provides insights into selective inhibition of Plasmodium cytochrome bc 1 complexes.</title>
                    <journal_abbreviation>J.Biol.Chem.</journal_abbreviation>
                    <country>US</country>
                    <volume>299</volume>
                    <first_page>104860</first_page>
                    <last_page>104860</last_page>
                    <year>2023</year>
                    <external_references type="PUBMED">37236355</external_references>
                    <external_references type="DOI">doi:10.1016/j.jbc.2023.104860</external_references>
                    <external_references type="ISSN">1083-351X</external_references>
                    <external_references type="CSD">0071</external_references>
                    <external_references type="ASTM">JBCHA3</external_references>
                </journal_citation>
            </primary_citation>
        </citation_list>
        <pdb_list>
            <pdb_reference>
                <pdb_id>7tz6</pdb_id>
                <relationship>
                    <in_frame>FULLOVERLAP</in_frame>
                </relationship>
            </pdb_reference>
        </pdb_list>
        <other_db_list>
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                <db_name>EMDB</db_name>
                <accession_id>EMD-26203</accession_id>
                <content_type>associated EM volume</content_type>
                <details>Structure of mitochondrial bc1 in complex with ck-2-68</details>
            </db_reference>
        </other_db_list>
    </crossreferences>
    <sample>
        <name>Bovine heart mitochondrial cytochrome bc1 complex</name>
        <supramolecule_list>
            <complex_supramolecule supramolecule_id="1">
                <name>Bovine heart mitochondrial cytochrome bc1 complex</name>
                <parent>0</parent>
                <macromolecule_list>
                    <macromolecule>
                        <macromolecule_id>1</macromolecule_id>
                    </macromolecule>
                    <macromolecule>
                        <macromolecule_id>2</macromolecule_id>
                    </macromolecule>
                    <macromolecule>
                        <macromolecule_id>3</macromolecule_id>
                    </macromolecule>
                    <macromolecule>
                        <macromolecule_id>4</macromolecule_id>
                    </macromolecule>
                    <macromolecule>
                        <macromolecule_id>5</macromolecule_id>
                    </macromolecule>
                    <macromolecule>
                        <macromolecule_id>6</macromolecule_id>
                    </macromolecule>
                    <macromolecule>
                        <macromolecule_id>7</macromolecule_id>
                    </macromolecule>
                    <macromolecule>
                        <macromolecule_id>8</macromolecule_id>
                    </macromolecule>
                    <macromolecule>
                        <macromolecule_id>9</macromolecule_id>
                    </macromolecule>
                    <macromolecule>
                        <macromolecule_id>10</macromolecule_id>
                    </macromolecule>
                    <macromolecule>
                        <macromolecule_id>11</macromolecule_id>
                    </macromolecule>
                </macromolecule_list>
                <natural_source database="NCBI">
                    <organism ncbi="9913">Bos taurus</organism>
                </natural_source>
            </complex_supramolecule>
        </supramolecule_list>
        <macromolecule_list>
            <protein_or_peptide macromolecule_id="1">
                <name>Cytochrome b-c1 complex subunit 1, mitochondrial</name>
                <natural_source database="NCBI">
                    <organism ncbi="9913">Bos taurus</organism>
                </natural_source>
                <molecular_weight>
                    <theoretical units="MDa">0.049266253999999995</theoretical>
                </molecular_weight>
                <number_of_copies>2</number_of_copies>
                <enantiomer>LEVO</enantiomer>
                <sequence>
                    <string>TATYAQALQSVPETQVSQLDNGLRVASEQSSQPTCTVGVWIDAGSRYESEKNNGAGYFVEHLAFKGTKNRPGNALEKEVE
SMGAHLNAYSTREHTAYYIKALSKDLPKAVELLADIVQNCSLEDSQIEKERDVILQELQENDTSMRDVVFNYLHATAFQG
TPLAQSVEGPSENVRKLSRADLTEYLSRHYKAPRMVLAAAGGLEHRQLLDLAQKHFSGLSGTYDEDAVPTLSPCRFTGSQ
ICHREDGLPLAHVAIAVEGPGWAHPDNVALQVANAIIGHYDCTYGGGAHLSSPLASIAATNKLCQSFQTFNICYADTGLL
GAHFVCDHMSIDDMMFVLQGQWMRLCTSATESEVLRGKNLLRNALVSHLDGTTPVCEDIGRSLLTYGRRIPLAEWESRIA
EVDARVVREVCSKYFYDQCPAVAGFGPIEQLPDYNRIRSGMFWLRF</string>
                    <external_references type="UNIPROTKB">P31800</external_references>
                </sequence>
            </protein_or_peptide>
            <protein_or_peptide macromolecule_id="2">
                <name>Cytochrome b-c1 complex subunit 2, mitochondrial</name>
                <natural_source database="NCBI">
                    <organism ncbi="9913">Bos taurus</organism>
                </natural_source>
                <molecular_weight>
                    <theoretical units="MDa">0.046575468999999994</theoretical>
                </molecular_weight>
                <number_of_copies>2</number_of_copies>
                <enantiomer>LEVO</enantiomer>
                <sequence>
                    <string>SLKVAPKVKATEAPAGVPPHPQDLEFTRLPNGLVIASLENYAPASRIGLFIKAGSRYENSNNLGTSHLLRLASSLTTKGA
SSFKITRGIEAVGGKLSVTSTRENMAYTVECLRDDVDILMEFLLNVTTAPEFRRWEVAALQPQLRIDKAVALQNPQAHVI
ENLHAAAYRNALANSLYCPDYRIGKVTPVELHDYVQNHFTSARMALIGLGVSHPVLKQVAEQFLNIRGGLGLSGAKAKYH
GGEIREQNGDSLVHAALVAESAAIGSAEANAFSVLQHVLGAGPHVKRGSNATSSLYQAVAKGVHQPFDVSAFNASYSDSG
LFGFYTISQAASAGDVIKAAYNQVKTIAQGNLSNPDVQAAKNKLKAGYLMSVESSEGFLDEVGSQALAAGSYTPPSTVLQ
QIDAVADADVINAAKKFVSGRKSMAASGNLGHTPFIDEL</string>
                    <external_references type="UNIPROTKB">P23004</external_references>
                </sequence>
            </protein_or_peptide>
            <protein_or_peptide macromolecule_id="3">
                <name>Cytochrome b</name>
                <natural_source database="NCBI">
                    <organism ncbi="9913">Bos taurus</organism>
                </natural_source>
                <molecular_weight>
                    <theoretical units="MDa">0.04262033999999999</theoretical>
                </molecular_weight>
                <number_of_copies>2</number_of_copies>
                <enantiomer>LEVO</enantiomer>
                <sequence>
                    <string>MTNIRKSHPLMKIVNNAFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWIIR
YMHANGASMFFICLYMHVGRGLYYGSYTFLETWNIGVILLLTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNL
VEWIWGGFSVDKATLTRFFAFHFILPFIIMAIAMVHLLFLHETGSNNPTGISSDVDKIPFHPYYTIKDILGALLLILALM
LLVLFAPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAFSILILALIPLLHTSKQRSMMFRPL
SQCLFWALVADLLTLTWIGGQPVEHPYITIGQLASVLYFLLILVLMPTAGTIENKLLKW</string>
                    <external_references type="UNIPROTKB">P00157</external_references>
                </sequence>
            </protein_or_peptide>
            <protein_or_peptide macromolecule_id="4">
                <name>Cytochrome c1, heme protein, mitochondrial</name>
                <natural_source database="NCBI">
                    <organism ncbi="9913">Bos taurus</organism>
                </natural_source>
                <molecular_weight>
                    <theoretical units="MDa">0.027323276999999997</theoretical>
                </molecular_weight>
                <number_of_copies>2</number_of_copies>
                <enantiomer>LEVO</enantiomer>
                <sequence>
                    <string>SDLELHPPSYPWSHRGLLSSLDHTSIRRGFQVYKQVCSSCHSMDYVAYRHLVGVCYTEDEAKALAEEVEVQDGPNEDGEM
FMRPGKLSDYFPKPYPNPEAARAANNGALPPDLSYIVRARHGGEDYVFSLLTGYCEPPTGVSLREGLYFNPYFPGQAIGM
APPIYNEVLEFDDGTPATMSQVAKDVCTFLRWAAEPEHDHRKRMGLKMLLMMGLLLPLVYAMKRHKWSVLKSRKLAYRPP
K</string>
                    <external_references type="UNIPROTKB">P00125</external_references>
                </sequence>
            </protein_or_peptide>
            <protein_or_peptide macromolecule_id="5">
                <name>Cytochrome b-c1 complex subunit Rieske, mitochondrial</name>
                <natural_source database="NCBI">
                    <organism ncbi="9913">Bos taurus</organism>
                </natural_source>
                <molecular_weight>
                    <theoretical units="MDa">0.02164058</theoretical>
                </molecular_weight>
                <number_of_copies>2</number_of_copies>
                <enantiomer>LEVO</enantiomer>
                <sequence>
                    <string>SHTDIKVPDFSDYRRPEVLDSTKSSKESSEARKGFSYLVTATTTVGVAYAAKNVVSQFVSSMSASADVLAMSKIEIKLSD
IPEGKNMAFKWRGKPLFVRHRTKKEIDQEAAVEVSQLRDPQHDLERVKKPEWVILIGVCTHLGCVPIANAGDFGGYYCPC
HGSHYDASGRIRKGPAPLNLEVPSYEFTSDDMVIVG</string>
                    <external_references type="UNIPROTKB">P13272</external_references>
                </sequence>
                <ec_number>1.10.2.2</ec_number>
            </protein_or_peptide>
            <protein_or_peptide macromolecule_id="6">
                <name>Cytochrome b-c1 complex subunit 7</name>
                <natural_source database="NCBI">
                    <organism ncbi="9913">Bos taurus</organism>
                </natural_source>
                <molecular_weight>
                    <theoretical units="MDa">0.013370205999999999</theoretical>
                </molecular_weight>
                <number_of_copies>2</number_of_copies>
                <enantiomer>LEVO</enantiomer>
                <sequence>
                    <string>AGRPAVSASSRWLEGIRKWYYNAAGFNKLGLMRDDTIHENDDVKEAIRRLPENLYNDRVFRIKRALDLSMRQQILPKEQW
TKYEEDKSYLEPYLKEVIRERKEREEWAKK</string>
                    <external_references type="UNIPROTKB">P00129</external_references>
                </sequence>
            </protein_or_peptide>
            <protein_or_peptide macromolecule_id="7">
                <name>Cytochrome b-c1 complex subunit 8</name>
                <natural_source database="NCBI">
                    <organism ncbi="9913">Bos taurus</organism>
                </natural_source>
                <molecular_weight>
                    <theoretical units="MDa">0.009448833</theoretical>
                </molecular_weight>
                <number_of_copies>2</number_of_copies>
                <enantiomer>LEVO</enantiomer>
                <sequence>
                    <string>GRQFGHLTRVRHVITYSLSPFEQRAFPHYFSKGIPNVLRRTRACILRVAPPFVAFYLVYTWGTQEFEKSKRKNPAAYEND</string>
                    <external_references type="UNIPROTKB">P13271</external_references>
                </sequence>
            </protein_or_peptide>
            <protein_or_peptide macromolecule_id="8">
                <name>Cytochrome b-c1 complex subunit 6, mitochondrial</name>
                <natural_source database="NCBI">
                    <organism ncbi="9913">Bos taurus</organism>
                </natural_source>
                <molecular_weight>
                    <theoretical units="MDa">0.009189115999999999</theoretical>
                </molecular_weight>
                <number_of_copies>2</number_of_copies>
                <enantiomer>LEVO</enantiomer>
                <sequence>
                    <string>GDPKEEEEEEEELVDPLTTVREQCEQLEKCVKARERLELCDERVSSRSQTEEDCTEELLDFLHARDHCVAHKLFNSLK</string>
                    <external_references type="UNIPROTKB">P00126</external_references>
                </sequence>
            </protein_or_peptide>
            <protein_or_peptide macromolecule_id="9">
                <name>Cytochrome b-c1 complex subunit Rieske, mitochondrial</name>
                <natural_source database="NCBI">
                    <organism ncbi="9913">Bos taurus</organism>
                </natural_source>
                <molecular_weight>
                    <theoretical units="MDa">0.007964259</theoretical>
                </molecular_weight>
                <number_of_copies>2</number_of_copies>
                <enantiomer>LEVO</enantiomer>
                <sequence>
                    <string>MLSVAARSGPFAPVLSATSRGVAGALRPLVQAAVPATSESPVLDLKRSVLCRESLRGQAAGRPLVASVSLNVPASVRY</string>
                    <external_references type="UNIPROTKB">P13272</external_references>
                </sequence>
                <ec_number>1.10.2.2</ec_number>
            </protein_or_peptide>
            <protein_or_peptide macromolecule_id="10">
                <name>Cytochrome b-c1 complex subunit 9</name>
                <natural_source database="NCBI">
                    <organism ncbi="9913">Bos taurus</organism>
                </natural_source>
                <molecular_weight>
                    <theoretical units="MDa">0.007338425</theoretical>
                </molecular_weight>
                <number_of_copies>2</number_of_copies>
                <enantiomer>LEVO</enantiomer>
                <sequence>
                    <string>VAPTLTARLYSLLFRRTSTFALTIVVGALFFERAFDQGADAIYEHINEGKLWKHIKHKYENKE</string>
                    <external_references type="UNIPROTKB">P00130</external_references>
                </sequence>
            </protein_or_peptide>
            <protein_or_peptide macromolecule_id="11">
                <name>Cytochrome b-c1 complex subunit 10</name>
                <natural_source database="NCBI">
                    <organism ncbi="9913">Bos taurus</organism>
                </natural_source>
                <molecular_weight>
                    <theoretical units="MDa">0.006527604</theoretical>
                </molecular_weight>
                <number_of_copies>2</number_of_copies>
                <enantiomer>LEVO</enantiomer>
                <sequence>
                    <string>MLTRFLGPRYRQLARNWVPTASLWGAVGAVGLVWATDWRLILDWVPYINGKFKKDD</string>
                    <external_references type="UNIPROTKB">P07552</external_references>
                </sequence>
            </protein_or_peptide>
            <ligand macromolecule_id="12">
                <name>PROTOPORPHYRIN IX CONTAINING FE</name>
                <molecular_weight>
                    <theoretical units="MDa">0.000616487</theoretical>
                </molecular_weight>
                <number_of_copies>4</number_of_copies>
                <formula>HEM</formula>
            </ligand>
            <ligand macromolecule_id="13">
                <name>7-chloranyl-3-methyl-2-[4-[[4-(trifluoromethyloxy)phenyl]methyl]phenyl]-1~{H}-quinolin-4-one</name>
                <molecular_weight>
                    <theoretical units="MDa">0.000443845</theoretical>
                </molecular_weight>
                <number_of_copies>2</number_of_copies>
                <formula>JHB</formula>
            </ligand>
            <ligand macromolecule_id="14">
                <name>HEME C</name>
                <molecular_weight>
                    <theoretical units="MDa">0.0006205189999999999</theoretical>
                </molecular_weight>
                <number_of_copies>2</number_of_copies>
                <formula>HEC</formula>
            </ligand>
            <ligand macromolecule_id="15">
                <name>FE2/S2 (INORGANIC) CLUSTER</name>
                <molecular_weight>
                    <theoretical units="MDa">0.00017581999999999998</theoretical>
                </molecular_weight>
                <number_of_copies>2</number_of_copies>
                <formula>FES</formula>
            </ligand>
        </macromolecule_list>
    </sample>
    <structure_determination_list>
        <structure_determination structure_determination_id="1">
            <method>singleParticle</method>
            <aggregation_state>particle</aggregation_state>
            <specimen_preparation_list>
                <single_particle_preparation preparation_id="1">
                    <concentration units="mg/mL">0.3</concentration>
                    <buffer>
                        <ph>7.5</ph>
                        <component>
                            <concentration units="mM">50.0</concentration>
                            <name>TrisCl</name>
                        </component>
                    </buffer>
                    <grid>
                        <model>Quantifoil R1.2/1.3</model>
                        <material>COPPER</material>
                        <mesh>400</mesh>
                        <support_film film_type_id="1">
                            <film_material>CARBON</film_material>
                            <film_topology>HOLEY</film_topology>
                        </support_film>
                        <pretreatment>
                            <type>GLOW DISCHARGE</type>
                            <time units="s">30</time>
                        </pretreatment>
                    </grid>
                    <vitrification>
                        <cryogen_name>ETHANE</cryogen_name>
                        <chamber_humidity units="percentage">95</chamber_humidity>
                        <chamber_temperature units="K">277</chamber_temperature>
                        <instrument>FEI VITROBOT MARK IV</instrument>
                    </vitrification>
                </single_particle_preparation>
            </specimen_preparation_list>
            <microscopy_list>
                <single_particle_microscopy microscopy_id="1">
                    <microscope>FEI TITAN KRIOS</microscope>
                    <illumination_mode>FLOOD BEAM</illumination_mode>
                    <imaging_mode>BRIGHT FIELD</imaging_mode>
                    <electron_source>FIELD EMISSION GUN</electron_source>
                    <acceleration_voltage units="kV">300</acceleration_voltage>
                    <nominal_defocus_min units="µm">0.7000000000000001</nominal_defocus_min>
                    <calibrated_defocus_min units="µm">0.63</calibrated_defocus_min>
                    <nominal_defocus_max units="µm">2.6</nominal_defocus_max>
                    <calibrated_defocus_max units="µm">2.82</calibrated_defocus_max>
                    <nominal_magnification>29000.0</nominal_magnification>
                    <calibrated_magnification>58275.0</calibrated_magnification>
                    <specimen_holder_model>FEI TITAN KRIOS AUTOGRID HOLDER</specimen_holder_model>
                    <cooling_holder_cryogen>NITROGEN</cooling_holder_cryogen>
                    <temperature>
                        <temperature_min units="K">80.0</temperature_min>
                        <temperature_max units="K">80.0</temperature_max>
                    </temperature>
                    <alignment_procedure>
                        <coma_free/>
                    </alignment_procedure>
                    <image_recording_list>
                        <image_recording image_recording_id="1">
                            <film_or_detector_model>GATAN K2 SUMMIT (4k x 4k)</film_or_detector_model>
                            <detector_mode>COUNTING</detector_mode>
                            <number_grids_imaged>1</number_grids_imaged>
                            <number_real_images>6960</number_real_images>
                            <average_electron_dose_per_image units="e/Å^2">50.24</average_electron_dose_per_image>
                        </image_recording>
                    </image_recording_list>
                </single_particle_microscopy>
            </microscopy_list>
            <singleparticle_processing image_processing_id="1">
                <image_recording_id>1</image_recording_id>
                <particle_selection>
                    <number_selected>883119</number_selected>
                </particle_selection>
                <ctf_correction>
                    <software_list>
                        <software>
                            <name>cisTEM</name>
                            <version>1.0</version>
                            <processing_details>beta</processing_details>
                        </software>
                    </software_list>
                    <type>PHASE FLIPPING AND AMPLITUDE CORRECTION</type>
                </ctf_correction>
                <startup_model type_of_model="OTHER">
                    <details>ab initio from a subset</details>
                </startup_model>
                <final_reconstruction>
                    <number_classes_used>1</number_classes_used>
                    <applied_symmetry>
                        <point_group>C1</point_group>
                    </applied_symmetry>
                    <resolution units="Å" res_type="BY AUTHOR">2.88</resolution>
                    <resolution_method>FSC 0.143 CUT-OFF</resolution_method>
                    <software_list>
                        <software>
                            <name>cisTEM</name>
                            <version>1.0</version>
                            <processing_details>beta</processing_details>
                        </software>
                    </software_list>
                    <number_images_used>454182</number_images_used>
                </final_reconstruction>
                <initial_angle_assignment>
                    <type>PROJECTION MATCHING</type>
                    <projection_matching_processing/>
                    <software_list>
                        <software>
                            <name>cisTEM</name>
                            <version>1.00</version>
                            <processing_details>beta</processing_details>
                        </software>
                    </software_list>
                </initial_angle_assignment>
                <final_angle_assignment>
                    <type>OTHER</type>
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                        <software>
                            <name>cisTEM</name>
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                    </software_list>
                    <details>auto-refine in cisTEM</details>
                </final_angle_assignment>
                <final_three_d_classification>
                    <number_classes>3</number_classes>
                    <software_list>
                        <software>
                            <name>cisTEM</name>
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                    </software_list>
                </final_three_d_classification>
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        </structure_determination>
    </structure_determination_list>
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        <symmetry>
            <space_group>1</space_group>
        </symmetry>
        <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
        <dimensions>
            <col>512</col>
            <row>512</row>
            <sec>512</sec>
        </dimensions>
        <origin>
            <col>0</col>
            <row>0</row>
            <sec>0</sec>
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        <spacing>
            <x>512</x>
            <y>512</y>
            <z>512</z>
        </spacing>
        <cell>
            <a units="Å">439.296</a>
            <b units="Å">439.296</b>
            <c units="Å">439.296</c>
            <alpha units="deg">90.0</alpha>
            <beta units="deg">90.0</beta>
            <gamma units="deg">90.0</gamma>
        </cell>
        <axis_order>
            <fast>X</fast>
            <medium>Y</medium>
            <slow>Z</slow>
        </axis_order>
        <statistics>
            <minimum>-15.043259000000001</minimum>
            <maximum>22.098385</maximum>
            <average>-0.014876114</average>
            <std>0.6908245</std>
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        <pixel_spacing>
            <x units="Å">0.858</x>
            <y units="Å">0.858</y>
            <z units="Å">0.858</z>
        </pixel_spacing>
        <contour_list>
            <contour primary="true">
                <level>2.6</level>
                <source>AUTHOR</source>
            </contour>
        </contour_list>
        <label>::::EMDATABANK.org::::EMD-26203::::</label>
        <annotation_details>cistemMap Btbc1 ck-2-68 dimer</annotation_details>
    </map>
</emd>
