2024-02-21 REL RCSB RCSB RCSB 2022-01-27 2022-07-20 2022-07-20 2024-02-21 National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) R01GM113164 United States Natural Sciences and Engineering Research Council (NSERC, Canada) RGPIN/356025-2013 Canada Canadian Institutes of Health Research (CIHR) MOP-97832 Canada CaKip3[2-482] - AMP-PNP in complex with a microtubule Benoit MPMH Asenjo AB Hunter B Allingham J Sosa H Kip3, kinesin, motility, microtubule, tubulin, MOTOR PROTEIN Hunter B Benoit MPMH Asenjo AB Doubleday C Trofimova D Frazer C Shoukat I Sosa H Allingham JS Kinesin-8-specific loop-2 controls the dual activities of the motor domain according to tubulin protofilament shape. Nat Commun UK 13 4198 4198 2022 35859148 doi:10.1038/s41467-022-31794-3 2041-1723 7tqx FULLOVERLAP CaKip3[2-482] - AMP-PNP in complex with a microtubule CaKip3[2-482] - AMP-PNP in complex with a microtubule 0 1 2 3 CaKip3[2-482] - AMP-PNP 1 3 Candida albicans 15R Microtubule 1 1 2 Sus scrofa Brain Tubulin alpha-1B chain Sus scrofa Brain 0.050204445 1 LEVO MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRT GTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVD YGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYR GDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYA KRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDSVEGEGEEEGEEY Q2XVP4 Tubulin beta-2B chain Sus scrofa Brain 0.049999887 1 LEVO MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYVPRAILVDLEPGTMDSVRSGP FGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYP DRIMNTFSVMPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMMAACDPRHGRYLTVAAIFRGR MSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTG EGMDEMEFTEAESNMNDLVSEYQQYQDATADEQGEFEEEEGEDEA A0A287AGU7 Kinesin-like protein Candida albicans 0.054869469 1 Escherichia coli LEVO MASYPNSLGSPATVTSTSVPTAKQSSISVAVRVRPFTEAESNRLVKIDNDDVFLGDGCLTSDNNNNNNNSNSNGNGNGNG SSAANSSGASTSRRAIFNTLGGLRKIINVVDDRMLIFDPPETNPLTKMQRNAFPNSFKGSRIREHRFVFDRLFDEDCTQD QVYRNTTQPLLDSVLDGYNATVFAYGATGCGKTHTISGTPEDPGVIFLTMKELYNRIEELKDTKIIDISLSYLEIYNETI RDLLNPMTQCKNLVIREDANNKISVSNLSRHRPNSVEEVMQLILEGNKNRTCSPTEANATSSRSHAVLQINVIQKDRTGD ITEEHTFATLSIIDLAGSERAAATKNRGARLNEGANINKSLLALGNCINALCDPRRRNHVPYRDSKLTRLLKFSLGGNCK TVMIVCVSPSSQHYDETLNTLKYADRAKEIKTKLIRNQHNLDRHVGSYLKMITEQKQEIEELRARESKMVESTINKRKDL ESKLEHHHHHH A0A1D8PKA4 GUANOSINE-5'-TRIPHOSPHATE 0.0005231799999999999 1 GTP MAGNESIUM ION 2.4305e-05 2 MG GUANOSINE-5'-DIPHOSPHATE 0.000443201 1 GDP TAXOL 0.0008539059999999999 1 TA1 PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER 0.000506196 1 ANP helical filament 6.8 80.0 K-PIPES 20.0 Paclitaxel 5.0 Magnesium chloride 1.0 EGTA 4.0 AMP-PNP UltrAuFoil R2/2 GOLD GOLD HOLEY PLASMA CLEANING ETHANE FEI VITROBOT MARK IV FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 0.7000000000000001 2.0 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN GATAN K2 SUMMIT (4k x 4k) COUNTING 1-40 70.45 1 5.56 168.089 C1 2.8 FSC 0.143 CUT-OFF RELION 3.1
2 half datasets containing one distinct half of each filament were refined independently. Number of asymmetric units used is reported in "number of segments used", due to the local processing strategy employed.
124055
manual picking of filaments
 NOT APPLICABLE RELION 3.1 emd_26074.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 416 416 416 0 0 0 416 416 416 343.19998 343.19998 343.19998 90.0 90.0 90.0 X Y Z 0.0 0.10039285 0.00064633647 0.003114482 0.8249999 0.8249999 0.8249999 0.009 AUTHOR Primary map, locally refined on the central asymmetric unit. FLEXIBLE FIT REAL emd_26074_msk_1.map emd_26074_msk_2.map emd_26074_msk_3.map emd_26074_msk_4.map emd_26074_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 416 416 416 0 0 0 416 416 416 343.19998 343.19998 343.19998 90.0 90.0 90.0 X Y Z -0.02395331 0.05440875 -0.000010955734 0.0040926053 0.8249999 0.8249999 0.8249999 AUTHOR Half map from the gold Standard refinement emd_26074_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 416 416 416 0 0 0 416 416 416 343.19998 343.19998 343.19998 90.0 90.0 90.0 X Y Z -0.02354393 0.05583698 -0.0000073982833 0.0041163424 0.8249999 0.8249999 0.8249999 AUTHOR Half map from the gold Standard refinement