2024-01-17 REL RCSB RCSB RCSB 2021-12-23 2022-03-09 2022-03-09 2024-01-17 National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) R01AI140868 United States National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) R01GM099989 United States National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) R01AI143563 United States Sub-tomogram averaged map of HIV-Env with Gag layer from immature VLPs Mangala Prasad V Lee KK HIV-1, envelope protein, glycoprotein, Env, membrane bound, VIRAL PROTEIN, Gag Mangala Prasad V Leaman DP Lovendahl KN Croft JT Benhaim MA Hodge EA Zwick MB Lee KK Cryo-ET of Env on intact HIV virions reveals structural variation and positioning on the Gag lattice. Cell 185 641 653.e17 2022 35123651 doi:10.1016/j.cell.2022.01.013 1097-4172 EMD-25178 other EM volume
C3 symmetric Env
 EMD-25186 other EM volume
Asymmetric reconstruction of Env
 Human immunodeficiency virus 1 Human immunodeficiency virus 1 0 1
HIV-1 ADA.CM Env glycoprotein displayed on high Env expressing VLPs
Human immunodeficiency virus 1 Homo sapiens ADA.CM 0.4 Outer membrane envelope 1000.0 VIRUS-LIKE PARTICLE STRAIN true false subtomogramAveraging particle 7.4 1.0 Phosphate buffer saline
1X PBS at pH 7.4
 Quantifoil R1.2/1.3 COPPER 400 CARBON HOLEY GLOW DISCHARGE OTHER ETHANE 100 277 FEI VITROBOT MARK IV
3ul sample, blotting time of 4-5 seconds.
Immature VLP particles displaying nearly full-length Env glycoprotein on membrane surface
 FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 2.7 2.5 5.0 58000.0 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN GATAN K2 SUMMIT (4k x 4k) COUNTING 2.0 1 C1 34.0 FSC 0.143 CUT-OFF EMAN2 1520 20 1520 Volumes picked semi-automatically PEET
Using semi-automated picking in PEET software
 EMAN2 OTHER EMAN2 emd_25809.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 32 32 32 -16 -16 -16 32 32 32 330.24 330.24 330.24 90.0 90.0 90.0 X Y Z -6.102888 7.1097636 0.000000004897728 0.99998474 10.32 10.32 10.32 0.7 AUTHOR Immature hVLP Env (relaxed C1 sym) with Gag layer - half map 7SKA PDB experimental model RIGID BODY FIT
hVLP-Env on membrane surface
Correlation coefficient REAL 4USN PDB experimental model RIGID BODY FIT
Gag-CA hexamer structure for inner protein layer under membrane bilayer
Correlation coefficient emd_25809_additional_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 32 32 32 -16 -16 -16 32 32 32 330.24 330.24 330.24 90.0 90.0 90.0 X Y Z -6.197795 7.482768 0.000000004729302 0.9999847 10.32 10.32 10.32 AUTHOR Immature hVLP Env (relaxed C1 sym) with Gag layer - full combined map