2024-10-23 REL RCSB RCSB RCSB 2021-12-23 2022-03-30 2022-03-30 2024-10-23 National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) Intramural United States Cryo-EM structure of SARS-CoV-2 Omicron spike in complex with antibodies A19-46.1 and B1-182.1 Zhou T Kwong PD SARS-CoV-2, spike, antibody, VIRAL PROTEIN, VIRAL PROTEIN-Immune System complex Zhou T Wang L Misasi J Pegu A Zhang Y Harris DR Olia AS Talana CA Yang ES Chen M Choe M Shi W Teng IT Creanga A Jenkins C Leung K Liu T Stancofski ED Stephens T Zhang B Tsybovsky Y Graham BS Mascola JR Sullivan NJ Kwong PD Structural basis for potent antibody neutralization of SARS-CoV-2 variants including B.1.1.529. Science US 376 eabn8897 eabn8897 2022 35324257 doi:10.1126/science.abn8897 1095-9203 0038 SCIEAS 7tcc FULLOVERLAP SARS-CoV-2 spike in complex with antibodies B1-182.1 and A19-46.1 SARS-CoV-2 spike in complex with antibodies B1-182.1 and A19-46.1 0 1 2 3 4 5 Severe acute respiratory syndrome coronavirus 2 0.570 Spike glycoprotein Severe acute respiratory syndrome coronavirus 2 0.141111234 3 Homo sapiens LEVO QCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHVISGTNGTKRFDNPVLPFNDGVYFASI EKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLDHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMD LEGKQGNFKNLREFVFKNIDGYFKIYSKHTPIIVREPEDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSS GWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLC PFDEVFNATRFASVYAWNRKRISNCVADYSVLYNLAPFFTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTG NIADYNYKLPDDFTGCVIAWNSNKLDSKVSGNYNYLYRLFRKSNLKPFERDISTEIYQAGNKPCNGVAGFNCYFPLRSYS FRPTYGVGHQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLKGTGVLTESNKKFLPFQQFGRDIADTTDAV RDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQGVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEYV NNSYECDIPIGAGICASYQTQTKSHGSASSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSV DCTMYICGDSTECSNLLLQYGSFCTQLKRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKYFGGFNFSQILPDPSKPSKRS FIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFKGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQI PFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNHNAQALNTLVKQLSSKFGAISSV LNDIFSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSA PHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNT VYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQGSGYIPEA PRDGQAYVRKDGEWVLLSTFLGRSLEVLFQGPGHHHHHHHHSAWSHPQFEKGGGSGGGGSGGSAWSHPQFEK P0DTC2 Heavy chain of antibody A19-46.1 Homo sapiens 0.014057687 3 Homo sapiens LEVO QVQLVESGGGVVQPGRSLRLSCAASGFTLSSYGMHWVRQAPGKGLEWVAVISYDGSNKYYVDSVKGRFTISRDNSKNTLY LQMNSLRAEDTAVYYCARGWAYWELLPDYYYGMDVWGQGTTVTVSS Light chain of antibody A19-46.1 Homo sapiens 0.011473737 3 Homo sapiens LEVO QTVVTQEPSFSVSPGGTVTLTCGLSSGSVSTAYFPSWYQQTPGQAPRTLIYGTNTRSSGVPDRFSGSILGNKAALTITGA QADDESDYYCVLYMGRGIVVFGGGTKLTVL heavy chain of antibody B1-182.1 Homo sapiens 0.013473101 3 Homo sapiens LEVO QMQLVQSGPEVKKPGTSVKVSCKASGFTFTSSAVQWVRQARGQRLEWIGWIVVGSGNTNYAQKFQERVTITRDMSTSTAY MELSSLRSEDTAVYYCAAPYCSGGSCFDGFDIWGQGTMVTVSS Light chain of antibody B1-182.1 Homo sapiens 0.011775985 3 Homo sapiens LEVO EIVLTQSPGTLSLSPGERATLSCRASQSVSSSYLAWYQQKPGQAPRLLIYGASSRATGFPDRFSGSGSGTDFTLTISRLE PEDFAVYYCQQYGNSPWTFGQGTKVEIR 2-acetamido-2-deoxy-beta-D-glucopyranose 0.000221208 15 NAG singleParticle particle 0.5 7.4
100 mM HEPES, 150 mM NaCl
 ETHANE 95 277 FEI VITROBOT MARK IV
Blot for 2-3.5 seconds before plugging..
Complex at 0.5 mg/mL concentration in the buffer
 FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 100.0 2.7 1.0 2.5 105000.0 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN OTHER 40.0 1 7MM0
SARS-CoV-2 receptor-binding domain in complex with antibody A23-58.1
 3.86 FSC 0.5 CUT-OFF cryoSPARC 2.15 46244 NOT APPLICABLE NOT APPLICABLE emd_25808.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 600 600 600 0 0 0 600 600 600 513.0 513.0 513.0 90.0 90.0 90.0 X Y Z -0.1913519 0.7968458 -0.000047962665 0.023108836 0.855 0.855 0.855 0.116 AUTHOR cryo-EM map of SARS-CoV2 Omicron spike in complex with antibodies B1-182.1 and A19-46.1 7MM0 PDB experimental model RIGID BODY FIT REAL emd_25808_msk_1.map emd_25808_additional_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 600 600 600 0 0 0 600 600 600 513.0 513.0 513.0 90.0 90.0 90.0 X Y Z -0.4454028 1.1348369 -0.000047962665 0.029507209 0.855 0.855 0.855 AUTHOR cryo-EM map of SARS-CoV2 Omicron spike in complex with antibodies B1-182.1 and A19-46.1 emd_25808_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 600 600 600 0 0 0 600 600 600 513.0 513.0 513.0 90.0 90.0 90.0 X Y Z -2.0428567 1.9861933 0.0006723291 0.23206322 0.855 0.855 0.855 AUTHOR cryo-EM half map of SARS-CoV2 Omicron spike in complex with antibodies B1-182.1 and A19-46.1 emd_25808_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 600 600 600 0 0 0 600 600 600 513.0 513.0 513.0 90.0 90.0 90.0 X Y Z -2.0533955 2.134939 0.00069088646 0.23293379 0.855 0.855 0.855 AUTHOR cryo-EM half map of SARS-CoV2 Omicron spike in complex with antibodies B1-182.1 and A19-46.1