2025-09-03 REL RCSB INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY EXPERIMENTAL_SUMMARY em_admin pdbx_database_PDB_obs_spr _em_admin.last_update STRUCTURE_SUMMARY em_admin pdbx_database_PDB_obs_spr pdbx_entry_details _em_admin.last_update RCSB RCSB 2021-12-21 2022-03-16 2022-03-16 2025-09-03 National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) R21 AI146644 United States Refined capsid structure of human adenovirus D26 at 3.4 A resolution Reddy VS Yu X Human Adenovirus D26 HAdV-D26 Ad26 Hexon Penton base IX, VIRUS Reddy VS Yu X Barry MA Refined Capsid Structure of Human Adenovirus D26 at 3.4 angstrom Resolution. Viruses CH 14 2022 35216007 doi:10.3390/v14020414 1999-4915 Yu X Veesler D Campbell MG Barry ME Asturias FJ Barry MA Reddy VS Cryo-EM structure of human adenovirus D26 reveals the conservation of structural organization among human adenoviruses. Sci Adv US 3 e1602670 2017 28508067 doi:10.1126/sciadv.1602670 2375-2548 7tau FULLOVERLAP EMDB EMD-25786 associated EM volume
Refined capsid structure of human adenovirus D26 at 3.4 A resolution
 Human adenovirus 26 Human adenovirus 26 0 1 2 3 4 5 6 7 8
Adenovirus
Human adenovirus 26 Hexon protein Human adenovirus 26 0.10721870299999998 12 LEVO MATPSMMPQWAYMHIAGQDASEYLSPGLVQFARATDTYFSLGNKFRNPTVAPTHDVTTDRSQRLTLRFVPVDREATTYLY KARFTLAVGDNRVLDMASTYFDIRGVLDRGPSFKPYSGTAYNSLAPKGAPNPSQWETKEKQGTTGGVQQEKDVTKTFGVA ATGGINITNQGLLLGTDETAENGKKDIYADKTFQPEPQVGEENWQENEAFYGGRALKKDTKMKPCYGSFARPTNEKGGQA KFKPVNEGEQPKDLDIDFAYFDVPGGSPPAGGSGEEYKADIILYTENVNLETPDTHVVYKPGTSDNSSEINLVQQSMPNR PNYIGFRDNFVGLMYYNSTGNMGVLAGQASQLNAVVDLQDRNTELSYQLLLDSLGDRTRYFSMWNSAVDSYDPDVRIIEN HGVEDELPNYCFPLNGTGTNSTYQGVKITNGNDGAEESEWEKDDAISRQNQICKGNVYAMEINLQANLWKSFLYSNVALY LPDSYKYTPANVKLPANTNTYEYMNGRVVAPSLVDAYINIGARWSLDPMDNVNPFNHPRNAGLRYRSMLLGNGRYVPFHI QVPQKFFAIKNLLLLPGSYTYEWNFRKDVNMILQSSLGNDLRVDGASVRFDSVNLYATFFPMAHNTASTLEAMLRNDTHD QSFNDYLSAANMLYPIPAKATNVPISIPSRNWAAFRGWSFTRLKTKETPSLGSGFDPYFVYSGSIPYLDGTFYLNHTFKK VSIMFDSSVSWPGNDRLLTPNEFEIKRSVDGEGYNVAQCNMTKDWFLVQMLSHYNIGYQGFHVPEGYKDRMYSFFRNFQP MSRQVVDEINYKDYKAVTLPFQHNNSGFTGYLAPTMRQGQPYPANFPYPLIGQTAVPSVTQKKFLCDRVMWRIPFSSNFM SMGALTDLGQNMLYANSAHALDMTFEVDPMDEPTLLYLLFEVFDVVRVHQPHRGVIEAVYLRTPFSAGNATT Q3S8B3 Penton protein Human adenovirus 26 0.058647702999999995 1 LEVO MRRAVVSSSPPPSYESVMAQATLEVPFVPPRYMAPTEGRNSIRYSELAPQYDTTRVYLVDNKSADIASLNYQNDHSNFLT TVVQNNDFTPAEASTQTINFDERSRWGGDLKTILHTNMPNVNEYMFTSKFKARVMVSRKHPEGVVETDLSQDKLEYEWFE FTLPEGNFSETMTIDLMNNAILENYLQVGRQNGVLESDIGVKFDSRNFKLGWDPVTKLVMPGVYTYEAFHPDVVLLPGCG VDFTESRLSNLLGIRKKQPFQEGFRIMYEDLEGGNIPALLDVPKYLESKKKVEDETKNAAAATADTTTRGDTFATPAQET AADKKVEVLPIEKDESGRSYNLIQGTHDTLYRSWYLSYTYGDPEKGVQSWTLLTTPDVTCGAEQVYWSLPDLMQDPVTFR STQQVSNYPVVGAELMPFRAKSFYNDLAVYSQLIRSYTSLTHVFNRFPDNQILCRPPAPTITTVSENVPALTDHGTLPLR SSIRGVQRVTVTDARRRTCPYVYKALGIVAPRVLSSRTF A4ZKL2 Fiber Human adenovirus 26 0.041039184 1 LEVO MAKRLRVEDDFNPVYPYGYARNQNIPFLTPPFVSSDGFKNFPPGVLSLKLADPITINNGDVSLKVGGGLAVEQQTGNLSV NPDAPLQVASDKLQLALAPPFEVRDGKLALKAGNGLKVLDNSITGLTGLLNTLVVLTGRGIGTEELKNDDGVTNKGVGLR VRLGDDGGLTFDKKGDLVAWNKKDDRRTLWTTPDTSPNCKMSTEKDSKLTLTLTKCGSQVLGNVSLLAVTGEYHQMTATT KKDVKISLLFDENGILLPSSSLSKDYWNYRSDDSIVSQKYNNAVPFMPNLTAYPKPSAQNAKNYSRTKIISNVYLGALTY QPVIITIAFNQETENGCAYSITFTFTWQKDYSAQQFDVTSFTFSYLTQENKDKD A4ZKM1 Pre-hexon-linking protein IIIa Human adenovirus 26 0.062201371 1 LEVO MSQQAPDPAIRAALQSQPSGLASDDWEAAMQRIMALTTRNPESFRQQPQANRLSAILEAVVPSRTNPTHEKVLAIVNALA ENKAIRPDEAGLVYNALLERVGRYNSTNVQSNLDRLVTDVREAVAQRERFKNEGLGSLVALNAFLATQPANVPRGQDDYT NFISALRLMVTEVPQSEVYQSGPDYFFQTSRQGLQTVNLSQAFKNLRGLWGVQAPVGDRSTVSSLLTPNSRLLLLLIAPF TDSGSVNRNSYLGHLLTLYREAIGQAQVDEQTFQEITSVSRALGQNDTDSLRATLNFLLTNRQQKIPAQYALSAEEERIL RYVQQSVGLFLMQEGATPSAALDMTARNMEPSMYAANRPFINKLMDYLHRAAAMNTDYFTNAILNPHWLPPPGFYTGEYD MPDPNDGFLWDDVDSAVFSPTFQKRQEAPPSEGAVGRSPFPSLGSLHSLPGSVNSGRVSRPRLLGEDEYLNDSLLQPPRA KNAMANNGIESLVDKLNRWKTYAQDHRDAPAPRRQRHDRQRGLVWDDEDSADDSSVLDLGGSGGVNPFAHLQPKLGRRMF A4ZKL1 PIX Human adenovirus 26 0.013800376999999999 4 LEVO MNGTGGAFEGGLFSPYLTTRLPGWAGVRQNVMGSTVDGRPVLPANSSTMTYATVGNSSLDSTAAAAAAAAAMTATRLASS YMPSSGSSPSVPSSIIAEEKLLALLAELEALSRQLAALTQQVSELREQQQQQNK A4ZKK7 PVIII Human adenovirus 26 0.024633643 2 LEVO MSKEIPTPYMWSYQPQMGLAAGASQDYSTRMNWLSAGPSMISRVNGVRSHRNQILLEQAAVTSTPRAKLNPRNWPSTLVY QEIPGPTTVLLPRDALAEVRMTNSGVQLAGGASRCPLRPQSGIKTLVIRGRGTQLNDELVSSSIGLRPDGVFQLAGAGRS SFTPNQAYLTLQSSSSEPRSGGIGTLQFVEEFVPSVYFNPFSGSPGLYPDEFIPNFDAVREAVDGYD A4ZKM0 Pre-protein VI Human adenovirus 26 0.025546086 9 LEVO MEDINFASLAPRHGTRPFMGTWNEIGTSQLNGGAFNWSSVWSGLKNFGSTLRTYGNKAWNSSTGQLLREKLKDQNFQQKV VDGLASGINGVVDIANQAVQREINSRLDPRPPTVVEMEDATLPPPKGEKRPRPDAEETILQVDEPPSYEEAVKAGMPTTR IIAPLATGVMKPATLDLPPPPAPAPPKATPVVQAPPVATAVRRVPARRQAQNWQSTLHSIVGLGVKSLKRRRCY A4ZKL5 Unknown fragment Human adenovirus 26 0.001294587 1 LEVO (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) singleParticle particle 5 8.1 40.0 Tris Tris
40 mM Tris pH 8.1 300 mM NaCl 10 mM CaCl2
 C-flat-1.2/1.3 COPPER ETHANE 90 298 GATAN CRYOPLUNGE 3
Blot for 3 seconds before plunging.
Gradient purified virus
 FEI TITAN FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 100.0 2.7 0.8 3.0 22500.0 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN GATAN K2 SUMMIT (4k x 4k) COUNTING 2 2000 53.0 1 37026 CTFFIND 4.0 NONE 5TX1 1 I FOURIER SPACE 3.38 FSC 0.143 CUT-OFF cisTEM 30834 RANDOM ASSIGNMENT cisTEM PROJECTION MATCHING 2 cisTEM emd_25786.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 832 832 832 -415 -415 -415 832 832 832 1089.9199 1089.9199 1089.9199 90.0 90.0 90.0 X Y Z -32.776363000000003 54.450029999999998 -0.0555016 3.6922314 1.31 1.31 1.31 1.8 AUTHOR Cropped version of the original cryo-EM map 928x928x928 pixels. 5TX1 PDB experimental model RIGID BODY FIT Correlation coefficient REAL 150.0