2025-05-28 REL RCSB INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY EXPERIMENTAL_SUMMARY em_admin em_software _em_admin.last_update _em_software.name STRUCTURE_SUMMARY atom_site chem_comp_atom chem_comp_bond em_entity_assembly entity entity_poly entity_poly_seq entity_src_gen pdbx_branch_scheme pdbx_entity_branch pdbx_entity_branch_descriptor pdbx_entity_branch_link pdbx_entity_branch_list pdbx_entity_nonpoly pdbx_nonpoly_scheme pdbx_poly_seq_scheme pdbx_struct_assembly_gen pdbx_struct_sheet_hbond pdbx_unobs_or_zero_occ_residues pdbx_validate_torsion struct_asym struct_conf struct_conn struct_ref struct_ref_seq struct_sheet struct_sheet_order struct_sheet_range _atom_site.B_iso_or_equiv _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.label_alt_id _atom_site.label_asym_id _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.type_symbol _em_entity_assembly.entity_id_list _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_entity_branch.entity_id _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_list.entity_id _pdbx_entity_nonpoly.entity_id _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.sheet_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_seq_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_seq_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_seq_id _struct_conf.end_label_asym_id _struct_conf.end_label_comp_id _struct_conf.end_label_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.pdbx_PDB_helix_length _struct_conf.pdbx_beg_PDB_ins_code _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_seq_id _struct_sheet.number_strands _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.sense _struct_sheet_order.sheet_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_seq_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.sheet_id STRUCTURE_SUMMARY em_admin pdbx_entry_details pdbx_modification_feature _em_admin.last_update _pdbx_entry_details.has_protein_modification DATA_COLLECTION em_admin em_software _em_admin.last_update _em_software.name RCSB RCSB 2021-12-08 2022-08-24 2022-08-24 2025-05-28 National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) R01-AI127521 United States Byrne PO McLellan JS virus, coronavirus, SARS CoV-2, SARS-CoV-2, spike, 2-7, D614G, RBD, 3 RBDs up, three RBDs up, scFv, complex, phage display, VIRAL PROTEIN, local refinement, focused refinement, VIRAL PROTEIN-IMMUNE SYSTEM complex Chang MR Tomasovic L Kuzmina NA Ronk AJ Byrne PO Johnson R Storm N Olmedillas E Hou YJ Schafer A Leist SR Tse LV Ke H Coherd C Nguyen K Kamkaew M Honko A Zhu Q Alter G Saphire EO McLellan JS Griffiths A Baric RS Bukreyev A Marasco WA Nat Commun UK 13 5814 5814 2022 36192374 doi:10.1038/s41467-022-33030-4 2041-1723 7t3m FULLOVERLAP Complex of SARS CoV-2 S, Spike Glycoprotein, variant D614G with Antibody 2-7 scFv Complex of SARS CoV-2 S, Spike Glycoprotein, variant D614G with Antibody 2-7 scFv 0 1 Spike glycoprotein Severe acute respiratory syndrome coronavirus 2 0.12700292999999999 3 Cricetulus griseus LEVO MFVFLVLLPLVSSQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFD NPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVY SSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGINITRFQT LLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRV QPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSF VIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPC NGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFL PFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQGVNCTEVPVAIHADQLTPTWRVYSTGS NVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPGSASSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTI SVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGF NFSQILPDPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAG TITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALN TLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRV DFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNT FVSGNCDVVIGIVNNTVYDPLQPELDSFK P0DTC2 Antibody 2-7 scFv Escherichia coli 0.030570977 3 Homo sapiens LEVO MKHLWFFLLLVAAAQPAMAQVTLKESGPTRVKPTQTLTLTCTFSGFSLSTTGVGVGWIRQPPGKALEWLALIYWNDDKRY SPSLKSRLTITKDTSKNQVVLTMTNMDPVDTATYYCARISGSGYFYPFDIWGQGTTVTVSSGGGGSGGGGSGGGGSNFML TQPHSVSESPGKTVTISCTRSSGSIASNYVQWYQQRPGSSPTTVIYEDNQRPSGVPDRFSGSIDSSSNSASLTISGLKAE DEADYYCQSYDSSSLWVFGGGTKLTVLGQPKAAPSAAALEHHHHHH 2-acetamido-2-deoxy-beta-D-glucopyranose 0.000221208 45 NAG singleParticle particle 0.5 8.0 2.0 Tris base 200.0 NaCl sodium chloride UltrAuFoil R1.2/1.3 GOLD 300 GOLD HOLEY PLASMA CLEANING 180 OTHER ETHANE 100 293 FEI VITROBOT MARK IV FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 1.5 2.5 GATAN K3 (6k x 4k) 70.0 1 PHASE FLIPPING AND AMPLITUDE CORRECTION 7K8Y C3 3.0 FSC 0.143 CUT-OFF 17708 OTHER MAXIMUM LIKELIHOOD emd_25663_msk_3.map emd_25663_msk_2.map emd_25663_msk_1.map emd_25663_additional_5.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 440 440 440 0 0 0 440 440 440 396.00003 396.00003 396.00003 90.0 90.0 90.0 X Y Z -1.6021392 6.155327 -0.0036854905 0.21477573 0.9000001 0.9000001 0.9000001 AUTHOR ::::EMDATABANK.org::::EMD-25663:::: emd_25663_additional_4.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 440 440 440 0 0 0 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