<emd xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" emdb_id="EMD-2564" version="3.0.1.1" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v3/v3_0_1_1/emdb_relaxed.xsd">
   <admin>
      <current_status>
         <code>REL</code>
         <processing_site>PDBe</processing_site>
      </current_status>
      <sites>
         <deposition>PDBe</deposition>
         <last_processing>PDBe</last_processing>
      </sites>
      <key_dates>
         <deposition>2014-01-20</deposition>
         <header_release>2014-03-12</header_release>
         <map_release>2014-03-12</map_release>
         <update>2014-05-21</update>
      </key_dates>
      <title>Cryo-EM of SecA-70S complex</title>
      <authors_list>
         <author>Singh R</author>
         <author>Kraft C</author>
         <author>Jaiswal R</author>
         <author>Sejwal K</author>
         <author>Kasaragod V</author>
         <author>Kuper J</author>
         <author>Buerger J</author>
         <author>Mielke T</author>
         <author>Luirink J</author>
         <author>Bhushan S</author>
      </authors_list>
      <keywords>SecA, ribosome</keywords>
   </admin>
   <crossreferences>
      <citation_list>
         <primary_citation>
            <journal_citation published="true">
               <author order="1">Singh R</author>
               <author order="2">Kraft C</author>
               <author order="3">Jaiswal R</author>
               <author order="4">Sejwal K</author>
               <author order="5">Kasaragod V</author>
               <author order="6">Kuper J</author>
               <author order="7">Buerger J</author>
               <author order="8">Mielke T</author>
               <author order="9">Luirink J</author>
               <author order="10">Bhushan S</author>
               <title>Cryo-Electron Microscopic Structure of SecA Bound to the 70S Ribosome</title>
               <journal>J.BIOL.CHEM.</journal>
               <volume>289</volume>
               <first_page>7190</first_page>
               <last_page>7199</last_page>
               <year>2014</year>
               <external_references type="PUBMED">24443566</external_references>
               <external_references type="DOI">doi:10.1074/jbc.M113.506634</external_references>
            </journal_citation>
         </primary_citation>
      </citation_list>
   </crossreferences>
   <sample>
      <name>SecA-70S ribosome</name>
      <supramolecule_list>
         <sample_supramolecule supramolecule_id="1000">
            <name>SecA-70S ribosome</name>
            <oligomeric_state>two copies of SecA bound to the 70S ribosome</oligomeric_state>
            <number_unique_components>2</number_unique_components>
            <molecular_weight>
               <experimental units="MDa">2</experimental>
               <theoretical units="MDa">2</theoretical>
            </molecular_weight>
         </sample_supramolecule>
         <complex_supramolecule supramolecule_id="1">
            <name synonym="70S">70S ribosome</name>
            <recombinant_exp_flag>false</recombinant_exp_flag>
            <natural_source database="NCBI">
               <organism ncbi="562">Escherichia coli</organism>
            </natural_source>
            <recombinant_expression database="NCBI">
               </recombinant_expression>
            <molecular_weight>
               <experimental units="MDa">2</experimental>
               <theoretical units="MDa">2</theoretical>
            </molecular_weight>
            <ribosome-details>ribosome-prokaryote: ALL</ribosome-details>
         </complex_supramolecule>
      </supramolecule_list>
      <macromolecule_list>
         <protein_or_peptide macromolecule_id="1">
            <name>SecA</name>
            <natural_source database="NCBI">
               <organism ncbi="562">Escherichia coli</organism>
            </natural_source>
            <molecular_weight>
               <experimental units="MDa">0.1</experimental>
               <theoretical units="MDa">0.1</theoretical>
            </molecular_weight>
            <recombinant_exp_flag>false</recombinant_exp_flag>
            <recombinant_expression database="NCBI">
               </recombinant_expression>
            <sequence>
               </sequence>
         </protein_or_peptide>
      </macromolecule_list>
   </sample>
   <structure_determination_list>
      <structure_determination structure_determination_id="1">
         <method>singleParticle</method>
         <aggregation_state>particle</aggregation_state>
         <specimen_preparation_list>
            <single_particle_preparation preparation_id="1">
               <buffer>
                  <ph>7.6</ph>
                  <details>40 mM Hepes pH 7.6, 50 mM K-acetate, 25 mM Mg-Acetate, 5mM DTT, 0.1% protease inhibitor pill/ml, 0.1 U/ml RNAsin, 125 mM sucrose</details>
               </buffer>
               <grid>
                  <details>2-nm carbon-coated holey grids</details>
               </grid>
               <vitrification>
                  <cryogen_name>ETHANE</cryogen_name>
                  <chamber_humidity units="percentage">100</chamber_humidity>
                  <instrument>FEI VITROBOT MARK III</instrument>
                  <method>Blot for 5 seconds before plunging</method>
               </vitrification>
            </single_particle_preparation>
         </specimen_preparation_list>
         <microscopy_list>
            <single_particle_microscopy microscopy_id="1">
               <microscope>FEI POLARA 300</microscope>
               <illumination_mode>OTHER</illumination_mode>
               <imaging_mode>BRIGHT FIELD</imaging_mode>
               <electron_source>FIELD EMISSION GUN</electron_source>
               <acceleration_voltage units="kV">300</acceleration_voltage>
               <nominal_defocus_min units="&#181;m">1.5</nominal_defocus_min>
               <nominal_defocus_max units="&#181;m">4.5</nominal_defocus_max>
               <nominal_magnification>39000.0</nominal_magnification>
               <specimen_holder_model>GATAN LIQUID NITROGEN</specimen_holder_model>
               <date>2011-06-11</date>
               <image_recording_list>
                  <image_recording>
                     <film_or_detector_model category="FILM">KODAK 4489 FILM</film_or_detector_model>
                     <digitization_details>
                        <scanner>OTHER</scanner>
                        <sampling_interval units="&#181;m">0.25</sampling_interval>
                     </digitization_details>
                     <number_real_images>300</number_real_images>
                     <average_electron_dose_per_image units="e/&#8491;^2">25</average_electron_dose_per_image>
                  </image_recording>
               </image_recording_list>
            </single_particle_microscopy>
         </microscopy_list>
         <singleparticle_processing image_processing_id="1">
            <details>Spider</details>
            <ctf_correction>
               <details>Each Micrographs</details>
            </ctf_correction>
            <final_reconstruction>
               <applied_symmetry>
                  <point_group>C1</point_group>
               </applied_symmetry>
               <algorithm>OTHER</algorithm>
               <resolution res_type="BY AUTHOR" units="&#8491;">8.8</resolution>
               <resolution_method>OTHER</resolution_method>
               <software_list>
                  <software>
                     <name>Spider</name>
                  </software>
               </software_list>
               <number_images_used>115000</number_images_used>
            </final_reconstruction>
            <final_angle_assignment>
               <details>Spider</details>
            </final_angle_assignment>
         </singleparticle_processing>
      </structure_determination>
   </structure_determination_list>
   <map format="CCP4" size_kbytes="99268">
      <file>emd_2564.map.gz</file>
      <symmetry>
         <space_group>1</space_group>
      </symmetry>
      <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
      <dimensions>
         <col>294</col>
         <row>294</row>
         <sec>294</sec>
      </dimensions>
      <origin>
         <col>-147</col>
         <row>-147</row>
         <sec>-146</sec>
      </origin>
      <spacing>
         <x>294</x>
         <y>294</y>
         <z>294</z>
      </spacing>
      <cell>
         <a units="&#8491;">364.56</a>
         <b units="&#8491;">364.56</b>
         <c units="&#8491;">364.56</c>
         <alpha units="deg">90.0</alpha>
         <beta units="deg">90.0</beta>
         <gamma units="deg">90.0</gamma>
      </cell>
      <axis_order>
         <fast>X</fast>
         <medium>Y</medium>
         <slow>Z</slow>
      </axis_order>
      <statistics>
         <minimum>-0.13131857</minimum>
         <maximum>0.27054787</maximum>
         <average>0.00582486</average>
         <std>0.02309825</std>
      </statistics>
      <pixel_spacing>
         <x units="&#8491;">1.24</x>
         <y units="&#8491;">1.24</y>
         <z units="&#8491;">1.24</z>
      </pixel_spacing>
      <contour_list>
         <contour primary="true">
            <level>0.03</level>
            <source>AUTHOR</source>
         </contour>
      </contour_list>
      <annotation_details>reconstruction of SecA-70S complex</annotation_details>
      <details>::::EMDATABANK.org::::EMD-2564::::</details>
   </map>
   <interpretation>
      <modelling_list>
         <modelling>
            <initial_model>
               <access_code>1TF2</access_code>
            </initial_model>
            <refinement_protocol>RIGID BODY FIT</refinement_protocol>
            <software_list>
               <software>
                  <name>Chimera</name>
               </software>
            </software_list>
            <details>The domains were separately fitted by manual docking using coot and chimera</details>
            <refinement_space>REAL</refinement_space>
         </modelling>
      </modelling_list>
   </interpretation>
</emd>