2024-11-20 REL RCSB RCSB RCSB 2021-12-06 2022-10-19 2022-10-19 2024-11-20 National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) UM1 AI144462 United States Bill & Melinda Gates Foundation OPP1196345/INV-008813 United States The Envelope Glycoprotein SIVmac239.K180S SOSIP trimer in complex with 3 copies of the neutralizing antibody K11 Berndsen ZT Ward AB SIV, Env, vaccine, neutralizing antibody, glycoprotein, VIRAL PROTEIN, VIRAL PROTEIN-IMMUNE SYSTEM complex Zhao F Berndsen ZT Pedreno-Lopez N Burns A Allen JD Barman S Lee WH Chakraborty S Gnanakaran S Sewall LM Ozorowski G Limbo O Song G Yong P Callaghan S Coppola J Weisgrau KL Lifson JD Nedellec R Voigt TB Laurino F Louw J Rosen BC Ricciardi M Crispin M Desrosiers RC Rakasz EG Watkins DI Andrabi R Ward AB Burton DR Sok D Molecular insights into antibody-mediated protection against the prototypic simian immunodeficiency virus. Nat Commun UK 13 5236 5236 2022 36068229 doi:10.1038/s41467-022-32783-2 2041-1723 7t2p FULLOVERLAP SIVmac239.K180S SOSIP trimer in complex with 3 copies of K11 Fab SIVmac239.K180S SOSIP trimer in complex with 3 copies of K11 Fab 0 1 2 3 4 Simian immunodeficiency virus Envelope glycoprotein gp120 Simian immunodeficiency virus 0.060324441 1 Homo sapiens LEVO MGCLGNQLLIAILLLSVYGIYCTLYVTVFYGVPAWRNATIPLFCATKNRDTWGTTQCLPDNGDYSEMALNVTESFDAWNN TVTEQAIEDVWQLFETSIKPCVKLSPLCITMRCNKSETDRWGLTKSITTTASTTSTTASAKVDMVNETSSCIAQDNCTGL EQEQMISCKFNMTGLKRDKSKEYNETWYSADLVCEQGNNTGNESRCYMNHCNTSVIQESCDKHYWDAIRFRYCAPPGYAL LRCNDTNYSGFMPKCSKVVVSSCTRMMETQTSTWFGFNGTRAENRTYIYWHGRDNRTIISLNKYYNLTMKCRRPGNKTVL PVTIMSGLVFHSQPINDRPKQAWCWFGGKWKDAIKEVKQTIVKHPRYTGTNNTDKINLTAPGGGDPEVTFMWTNCRGEFL YCKMNWFLNWVEDRNTANQKPKEQHKRNYVPCHIRQIINTWHKVGKNVYLPPREGDLTCNSTVTSLIANIDWIDGNQTNI TMSAEVAELYRLELGDYKLVEITPIGLAPTSCKRYTTGGTSRRRRRR A0A5C0E975 Envelope glycoprotein gp41 Simian immunodeficiency virus 0.018144599999999997 1 Homo sapiens LEVO GVFVLGFLGFLATAGSAMGAASLTLTAQSRTLLAGIVQQQQQLLDVPKRQQELLRLTVWGTKNLQTRVTAIEKYLKDQAQ LNAWGCAFRQVCCTTVPWPNASLIPKWNNETWQEWERKVDFLEENITALLEEAQIQQEKNMYELQKLNGSGHHHHHHHH L7XFX7 K11 Fab heavy chain Macaca mulatta 0.053290769999999994 1 Homo sapiens LEVO DWTWRILFLVAAATGAHSQVQLQESGPGVVRPSQTLSLTCAVSGDTVSSCCFFWTWIRQPPGKGLEWIGNISYDNDNTNY NPSLKTRISISKDMSKNQFSLKLNSLTATDTAIYYCARESPSRGNFCYAYLYGNCPLHFDLWGQGVLVTVSSASTKGPSV FPLAPSSRSTSESTAALGCLVKDYFPEPVTVSWNSGSLTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYVCNVNHK PSNTKVDKRVEIKTCGGGSKPPTCPPCTSPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSQEDPDVKFNWYVNGA EVHHAQTKPRETQYNSTYRVVSVLTVTHQDWLNGKEYTCKVSNKALPAPIQKTISKDKGQPREPQVYTLPPSREELTKNQ VSLTCLVKGFYPSDIVVEWESSGQPENTYKTTPPVLDSDGSYFLYSKLTVDKSRWQQGNVFSCSVMHEALHNHYTQKSLS LSPGK K11 Fab light chain Macaca mulatta 0.02529315 1 Homo sapiens LEVO ETDTLLLWVLLLWVPGSTGDILLTQSPSSLSGSVGDRVTITCRASQGINSYLNWYQQKPGKAPKLLIYFANRLQSGVPSR FSGSGSGTEFTLTISSLQSEDGATYYCQQYDTFPTFGPGTKLDIKRTVAAPSVFIFPPSEDQVKSGTVSVVCLLNNFYPR EASVKWKVDGALKTGNSQESVTEQDSKDNTYSLSSTLTLSSTEYQSHKVYACEVTHQGLSSPVTKSFNRGEC 2-acetamido-2-deoxy-beta-D-glucopyranose 0.000221208 13 NAG singleParticle particle 1 7.4 C-flat-1.2/1.3 GLOW DISCHARGE ETHANE FEI TALOS ARCTICA FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 200 GATAN K2 SUMMIT (4k x 4k) COUNTING 50.0 1 C3 3.47 FSC 0.143 CUT-OFF cryoSPARC 177365 MAXIMUM LIKELIHOOD cryoSPARC MAXIMUM LIKELIHOOD cryoSPARC emd_25621.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 300 300 300 0 0 0 300 300 300 345.0 345.0 345.0 90.0 90.0 90.0 X Y Z -1.4600781 2.3706918 -0.000116056675 0.048809603 1.15 1.15 1.15 0.33 AUTHOR emd_25621_msk_1.map emd_25621_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 300 300 300 0 0 0 300 300 300 345.0 345.0 345.0 90.0 90.0 90.0 X Y Z -0.14731108 0.7791521 0.0016337924 0.034373615 1.15 1.15 1.15 AUTHOR emd_25621_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 300 300 300 0 0 0 300 300 300 345.0 345.0 345.0 90.0 90.0 90.0 X Y Z -0.16487755 0.78339607 0.0016297972 0.034408387 1.15 1.15 1.15 AUTHOR