REL PDBe PDBe PDBe 2014-01-03 2014-01-22 2014-02-26 2014-05-21 3D structure of the KMN network Petrovic A Mosalaganti S Keller J Mattiuzzo M Overlack K Krenn V De Antoni A Wohlgemuth S Cecatiello V Pasqualato S Raunser S Musacchio A Mitosis, outer kinetochore, KMN network Petrovic A Mosalaganti S Keller J Mattiuzzo M Overlack K Krenn V De Antoni A Wohlgemuth S Cecatiello V Pasqualato S Raunser S Musacchio A Modular Assembly of RWD Domains on the Mis12 Complex Underlies Outer Kinetochore Organization. MOLECULAR CELL 53 591 605 2014 24530301 doi:10.1016/j.molcel.2014.01.019 KMN network reconstituted as follows: human Mis12complex bound to Ndc80complex (bonsai) and Knl1( from amino acids, 2106-2316) KMN network reconstituted as follows: human Mis12complex bound to Ndc80complex (bonsai) and Knl1( from amino acids, 2106-2316)
The sample was monodisperse
One heterotetramer of Mis12C binds heterotetramer of Ndc80C and Knl1(2106-2316) 9 0.2 0.2 Size-exclusion chromatography Mis12 Homo sapiens Human nucleus, centeromere Kinetochore 0.02 0.02 1 Monomer true Escherichia coli BL21(DE3)-codon-plus-RIL pST39 Q9H081 GO:0000444 IPR008685 Polyamine-modulated factor 1 Homo sapiens Human nucleus, centeromere Kinetochore 0.02 0.02
truncated protein from amino acids (31-205) was generated and used for the complex formation
1 Monomer true Escherichia coli BL21(DE3)-codon-plus-RIL pST39 Q6P1K2 GO:0000444 IPR016851 Dsn1 Homo sapiens Human nucleus, centeromere Kinetochore 0.04 0.04
truncated protein from amino acids (68-356) was generated and used for the complex formation
1 Monomer true Escherichia coli BL21(DE3)-codon-plus-RIL pST39 Q9H410 GO:0000444 IPR013218 Nsl1 Homo sapiens Human nucleus, centeromere Kinetochore 0.02 0.02
truncated protein from amino acids (1-206) was generated and used for the complex formation
1 Monomer true Escherichia coli BL21(DE3)-codon-plus-RIL pST39 Q96IY1 GO:0000444 IPR013950 Bub-linking kinetochore protein Homo sapiens Human nucleus, centeromere Kinetochore 0.03 0.03
truncated protein from amino acids (2106-2311) was generated and used for the complex formation
1 Monomer true Escherichia coli BL21(DE3)-codon-plus-RIL pST39 Q8NG31 Highly expressed in cancer-1 Homo sapiens Human nucleus, centeromere Kinetochore 0.025 0.025
truncated protein from amino acids (1-286) was generated and used for the complex formation
1 Monomer true Escherichia coli BL21(DE3) pGEX6P-2rbs O14777 GO:0031262 IPR005550 Spc25 Homo sapiens Human nucleus, centeromere Kinetochore 0.01 0.01
truncated protein from amino acids (118-224) was generated and used for the complex formation
1 Monomer true Escherichia coli BL21(DE3) pGEX6P-2rbs Q9HBM1 GO:0031262 IPR013255 Spc24 Homo sapiens Human nucleus, centeromere Kinetochore 0.009 0.009
truncated protein from amino acids (122-197) was generated and used for the complex formation
1 Monomer true Escherichia coli BL21(DE3) pGEX6P-2rbs Q8NBT2 GO:0031262 IPR013252 Cell division cycle-assoiciated protein1 Homo sapiens Human nucleus, centeromere Kinetochore 0.02 0.02
truncated protein from amino acids (1-169) was generated and used for the complex formation
1 Monomer true Escherichia coli BL21(DE3) pGEX6P-2rbs Q9BZD4 GO:0031262 IPR005549 singleParticle particle 0.01 8.0
20mM Tris-HCl, 150mM NaCl, 1mM TCEP
 NEGATIVE
Grids with adsorbed protein floated on 0.07% Uranyl formate
200 mesh copper grids with thin carbon support, glow discharged
 NONE OTHER JEOL 1400 SPOT SCAN BRIGHT FIELD LAB6 120 1.8 1.5 50000.0 67200.0 JEOL
Minimal Dose system
2013-10-14 TVIPS TEMCAM-F416 (4k x 4k) 248 19 -50 0
Tilt pairs were collected at 50 and 0 degrees. Particle pairs were manually selected using e2RCTboxer program. RCT reconstruction of tilted particles was calculated from best class average by back projection and was followed by back projection refinement.
C1 OTHER 26.7 OTHER EMAN2/sparx 3764 10 emd_2549.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 128 128 128 -64 -64 -64 128 128 128 588.8 588.8 588.8 90.0 90.0 90.0 X Y Z -11.614444730000001 38.082832340000003 0.03312875 1.02653921 4.6 4.6 4.6 9.84 AUTHOR Reconstruction of KMN network
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 2VE7 A C RIGID BODY FIT Chimera
The crystal structures were fit into the overall density manually.
REAL 4NF9 A RIGID BODY FIT Chimera
The crystal structures were fit into the overall density manually.
REAL
emd_2549.tif
emd_2549_msk_1.map emd_2549_msk_1.map 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 128 128 128 -64 -64 -64 128 128 128 588.8 588.8 588.8 90.0 90.0 90.0 X Y Z 0.0 1.0 0.0464263 0.2104065 4.6 4.6 4.6 Binary mask representing the whole structure
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