<emd xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" emdb_id="EMD-2521" version="3.0.1.1" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v3/v3_0_1_1/emdb_relaxed.xsd">
   <admin>
      <current_status>
         <code>REL</code>
         <processing_site>PDBe</processing_site>
      </current_status>
      <sites>
         <deposition>PDBe</deposition>
         <last_processing>PDBe</last_processing>
      </sites>
      <key_dates>
         <deposition>2013-11-26</deposition>
         <header_release>2013-12-18</header_release>
         <map_release>2013-12-25</map_release>
         <update>2013-12-25</update>
      </key_dates>
      <title>Flagellar hook basal body in the tomogram of Salmonella mini-cell</title>
      <authors_list>
         <author>Kawamoto A</author>
         <author>Morimoto VY</author>
         <author>Miyata T</author>
         <author>Minamino T</author>
         <author>Hughes TK</author>
         <author>Kato T</author>
         <author>Namba K</author>
      </authors_list>
      <keywords>Flagellar motor, Type III secretion system, Salmonella typhimurium</keywords>
   </admin>
   <crossreferences>
      <citation_list>
         <primary_citation>
            <journal_citation published="true">
               <author order="1">Kawamoto A</author>
               <author order="2">Morimoto VY</author>
               <author order="3">Miyata T</author>
               <author order="4">Minamino T</author>
               <author order="5">Hughes TK</author>
               <author order="6">Kato T</author>
               <author order="7">Namba K</author>
               <title>Common and distinct structural features of Salmonella injectisome and flagellar basal body</title>
               <journal>SCI.REP.</journal>
               <volume>3</volume>
               <first_page>3369</first_page>
               <year>2013</year>
               <external_references type="PUBMED">24284544</external_references>
               <external_references type="DOI">doi:10.1038/srep03369</external_references>
            </journal_citation>
         </primary_citation>
      </citation_list>
   </crossreferences>
   <sample>
      <name>Flagellar hook basal body from Salmonella typhimurium mini-cell in situ</name>
      <supramolecule_list>
         <sample_supramolecule supramolecule_id="1000">
            <name>Flagellar hook basal body from Salmonella typhimurium mini-cell in situ</name>
            <number_unique_components>1</number_unique_components>
         </sample_supramolecule>
         <organelle_or_cellular_component_supramolecule supramolecule_id="1">
            <name synonym="flagellar motor">flagellar hook basal body</name>
            <recombinant_exp_flag>false</recombinant_exp_flag>
            <natural_source database="NCBI">
               <organism ncbi="90371">Salmonella enterica subsp. enterica serovar Typhimurium</organism>
               <cellular_location>Plasma membrane</cellular_location>
            </natural_source>
            <recombinant_expression database="NCBI">
               </recombinant_expression>
         </organelle_or_cellular_component_supramolecule>
      </supramolecule_list>
   </sample>
   <structure_determination_list>
      <structure_determination structure_determination_id="1">
         <method>subtomogramAveraging</method>
         <aggregation_state>cell</aggregation_state>
         <specimen_preparation_list>
            <subtomogram_averaging_preparation preparation_id="1">
               <buffer>
                  <details>M9 medium (17.1g Na2HPO4-12H2O, 3g KH2PO4, 0.5g NaCl, 1g NH4Cl, 0.2%glycerol, 1% tryptone, 1mM MgSO4 per litre)</details>
               </buffer>
               <grid>
                  <details>Quantifoil molybdenum 200 mesh R0.6/1.0 grid with thin carbon support</details>
               </grid>
               <vitrification>
                  <cryogen_name>ETHANE</cryogen_name>
                  <chamber_humidity units="percentage">100</chamber_humidity>
                  <instrument>FEI VITROBOT MARK II</instrument>
               </vitrification>
            </subtomogram_averaging_preparation>
         </specimen_preparation_list>
         <microscopy_list>
            <subtomogram_averaging_microscopy microscopy_id="1">
               <microscope>FEI TITAN KRIOS</microscope>
               <illumination_mode>FLOOD BEAM</illumination_mode>
               <imaging_mode>BRIGHT FIELD</imaging_mode>
               <electron_source>FIELD EMISSION GUN</electron_source>
               <acceleration_voltage units="kV">300</acceleration_voltage>
               <nominal_cs units="mm">2.7</nominal_cs>
               <nominal_defocus_min units="&#181;m">4.0</nominal_defocus_min>
               <nominal_defocus_max units="&#181;m">7.0</nominal_defocus_max>
               <nominal_magnification>29000.0</nominal_magnification>
               <calibrated_magnification>49030.0</calibrated_magnification>
               <specimen_holder_model>FEI TITAN KRIOS AUTOGRID HOLDER</specimen_holder_model>
               <temperature>
                  <temperature_min units="K">80</temperature_min>
               </temperature>
               <date>2012-12-06</date>
               <image_recording_list>
                  <image_recording>
                     <film_or_detector_model category="CCD">FEI FALCON I (4k x 4k)</film_or_detector_model>
                     <average_electron_dose_per_image units="e/&#8491;^2">200</average_electron_dose_per_image>
                  </image_recording>
               </image_recording_list>
               <tilt_series>
                  <axis1>
                     <min_angle units="deg">-70</min_angle>
                     <max_angle units="deg">70</max_angle>
                  </axis1>
               </tilt_series>
            </subtomogram_averaging_microscopy>
         </microscopy_list>
         <subtomogram_averaging_processing image_processing_id="1">
            <final_reconstruction>
               <applied_symmetry>
                  <point_group>C26</point_group>
               </applied_symmetry>
               <algorithm>OTHER</algorithm>
               <resolution res_type="BY AUTHOR" units="&#8491;">45.0</resolution>
               <resolution_method>OTHER</resolution_method>
               <software_list>
                  <software>
                     <name>EMAN</name>
                  </software>
               </software_list>
               <number_subtomograms_used>48</number_subtomograms_used>
            </final_reconstruction>
         </subtomogram_averaging_processing>
      </structure_determination>
   </structure_determination_list>
   <map format="CCP4" size_kbytes="2155">
      <file>emd_2521.map.gz</file>
      <symmetry>
         <space_group>1</space_group>
      </symmetry>
      <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
      <dimensions>
         <col>82</col>
         <row>82</row>
         <sec>82</sec>
      </dimensions>
      <origin>
         <col>-234</col>
         <row>677</row>
         <sec>-49</sec>
      </origin>
      <spacing>
         <x>82</x>
         <y>82</y>
         <z>82</z>
      </spacing>
      <cell>
         <a units="&#8491;">934.8</a>
         <b units="&#8491;">934.8</b>
         <c units="&#8491;">934.8</c>
         <alpha units="deg">90.0</alpha>
         <beta units="deg">90.0</beta>
         <gamma units="deg">90.0</gamma>
      </cell>
      <axis_order>
         <fast>X</fast>
         <medium>Y</medium>
         <slow>Z</slow>
      </axis_order>
      <statistics>
         <minimum>-2.05901718</minimum>
         <maximum>4.54621983</maximum>
         <average>0.01755546</average>
         <std>0.88184667</std>
      </statistics>
      <pixel_spacing>
         <x units="&#8491;">11.4</x>
         <y units="&#8491;">11.4</y>
         <z units="&#8491;">11.4</z>
      </pixel_spacing>
      <contour_list>
         <contour primary="true">
            <level>0.0952</level>
            <source>AUTHOR</source>
         </contour>
      </contour_list>
      <annotation_details>Flagellar hook basal body from Salmonella mini-cell</annotation_details>
      <details>::::EMDATABANK.org::::EMD-2521::::</details>
   </map>
</emd>