REL PDBe PDBe PDBe 2013-11-21 2013-12-18 2014-02-26 2016-02-17 Electron cryo-microscopy of F420-reducing [NiFe] hydrogenase Frh Allegretti M Mills DJ McMullan G Kuehlbrandt W Vonck J hydrogenase, flavoprotein, [NiFe] hydrogenase, electron transfer, ferredoxin Allegretti M Mills DJ McMullan G Kuehlbrandt W Vonck J Atomic model of the F420-reducing [NiFe] hydrogenase by electron cryo-microscopy using a direct electron detector. ELIFE 3 e01963 e01963 2014 24569482 doi:10.7554/eLife.01963 4ci0 FULLOVERLAP F420 reducing hydrogenase F420 reducing hydrogenase a dodecamer of the heterotrimer FrhA, FrhB, FrhG 3 1.2 1.2 F420-reducing hydrogenase, subunit alpha Methanothermobacter marburgensis DSM 2133 cytoplasm 0.44 0.44 12 dodecamer false D9PYF9 IPR017682 IPR017679 IPR017681 F420-reducing hydrogenase, subunit beta Methanothermobacter marburgensis DSM 2133 cytoplasm 0.30 0.30 12 dodecamer false D9PYF6 IPR017682 IPR017679 IPR017681 F420-reducing hydrogenase, subunit gamma Methanothermobacter marburgensis DSM 2133 cytoplasm 0.30 0.30 12 dodecamer false D9PYF6 IPR017682 IPR017679 IPR017681 singleParticle particle 0.7 7.6
50mM Tris-HCl, 0.025mM FAD
freshly glow discharged Quantifoil holey grid (1 micrometer holes)
 ETHANE 70 103 FEI VITROBOT MARK I blotting 2.5 seconds before plunging FEI POLARA 300 FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 2.2 0.8 2.5 78000.0 106000.0 OTHER 77 80 79 Objective lens astigmatism was corrected at 120,000 times magnification
data was collected in movie mode
2013-05-27 FEI FALCON II (4k x 4k) 235 22
Every image is the average of six frames recorded by the direct electron detector aligned to each other
16.
each image
 T OTHER 3.36 OTHER RELION 26000 emd_2513.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 224 224 224 0 0 0 224 224 224 295.68002 295.68002 295.68002 90.0 90.0 90.0 X Y Z -0.19804479 0.62828296 0.0022398 0.02294438 1.32 1.32 1.32 0.09 AUTHOR FrhABG dodecamer
::::EMDATABANK.org::::EMD-2513::::
 3zfs A B C FLEXIBLE FIT Coot
The structure was built using Coot based on an earlier model built into a lower resolution EM map
REAL
emd_2513.tif