REL PDBe PDBe PDBe 2013-10-27 2013-11-13 2014-08-27 2014-08-27 Cryo-EM Structure of Isomeric Molluscan Hemocyanin Type 1 triggered by viral infection Zhu HT Zhuang J Feng HL Liang RF Wang JY Xie LH Zhu P isomeric molluscan hemocyanin, viral infection, AbSV, phenoloxidase Zhu H Zhuang J Feng H Liang R Wang J Xie L Zhu P Cryo-EM structure of isomeric molluscan hemocyanin triggered by viral infection. PLOS ONE 9 e98766 2014 24887432 doi:10.1371/journal.pone.0098766 Isomeric Molluscan Hemocyanin triggered by AbSV infection Isomeric Molluscan Hemocyanin triggered by AbSV infection 1 8 isomeric hemocyanin type 1 Haliotis diversicolor 8 false C7FEG7 GO:0055114 IPR008922 singleParticle particle 0.5 7.8
20mM phosphate buffer, containing 2.5mM MgCl2
 ETHANE 100 277.15 FEI VITROBOT MARK IV Blot for 4 seconds before plunging FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 2.7 1.0 3.0 75000.0 125418.0 FEI TITAN KRIOS AUTOGRID HOLDER Objective lens astigmatism was corrected at 125418 times magnification FEI 2012-12-01 GATAN ULTRASCAN 4000 (4k x 4k) 2379 18
EMAN2 was initially used for particle picking, 2D classification, projection refinement and 3D reconstruction for both normal and isomeric hemocyanins with C5 symmetry imposed. Subsequently, 57,043 isomeric hemocyanin particles were imported to Relion-1.1 for further refinement and reconstruction by applying D5 symmetry, using the reconstructed map from EMAN2 as the initial model. Xmipp-2.4 was used for the? bfactor correction to generate the final 3D reconstruction map of isomeric hemocyanin.
Each particle
 D5 OTHER 6.8 OTHER EMAN2, Relion-1.1, Xmipp-2.4 57043 emd_2503.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 400 400 400 -200 -200 -200 400 400 400 478.4 478.4 478.4 90.0 90.0 90.0 X Y Z -5.1972332 10.29769993 0.00007128 1.00920987 1.196 1.196 1.196 1.7 AUTHOR Reconstruction of isomeric Halitotis diversicolor hemocyanin type 1 triggered by AbSV
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