REL PDBe PDBe PDBe 2013-10-20 2013-11-27 2013-12-25 2014-01-22 Structure of the 39S Large Subunit of the Mammalian Mitochondrial Ribosome Greber BJ Boehringer D Leitner A Bieri P Voigts-Hoffmann F Erzberger JP Leibundgut M Aebersold R Ban N mammalian mitochondrial ribosome, 39S large ribosomal subunit, translation, ribosomal proteins, rRNA, polypeptide exit site, membrane association Greber BJ Boehringer D Leitner A Bieri P Voigts-Hoffmann F Erzberger JP Leibundgut M Aebersold R Ban N Architecture of the Large Subunit of the Mammalian Mitochondrial Ribosome NATURE 505 515 519 2014 24362565 doi:10.1038/NATURE12890 4ce4 FULLOVERLAP 39S large subunit of the porcine mitochondrial ribosome 39S large subunit of the porcine mitochondrial ribosome monomer 1 1.6 39S large subunit of the mitochondrial ribosome 1 Monomer GO:0005761 false Sus scrofa domesticus domestic pig Liver Mitochondrion 1.6 singleParticle particle 7.9
20 mM HEPES-KOH, 100 mM KCl, 1 mM DTT, 20 mM MgCl2
200 mesh Quantifoil R2/1 and R 2/2 holey carbon grids
 ETHANE HOMEMADE PLUNGER FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 2.7 1.5 3.3 75000.0 141510.0 FEI TITAN KRIOS AUTOGRID HOLDER 2013-06-21 FEI FALCON I (4k x 4k) 14 20
For data processing Falcon 2 data were resampled to 1.41 Angstrom per pixel
 FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 2.7 1.2 3.6 59000.0 99290.0 FEI TITAN KRIOS AUTOGRID HOLDER 2013-05-02 FEI FALCON I (4k x 4k) 14 20
For data processing Falcon 2 data were resampled to 1.41 Angstrom per pixel
 FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 2.7 1.2 3.6 59000.0 99290.0 FEI TITAN KRIOS AUTOGRID HOLDER 2013-04-15 FEI FALCON I (4k x 4k) 14 20
For data processing Falcon 2 data were resampled to 1.41 Angstrom per pixel
 FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 2.7 1.2 3.6 59000.0 99290.0 FEI TITAN KRIOS AUTOGRID HOLDER 2013-03-17 FEI FALCON I (4k x 4k) 14 20
For data processing Falcon 2 data were resampled to 1.41 Angstrom per pixel
 FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 2.7 1.2 3.6 59000.0 99290.0 FEI TITAN KRIOS AUTOGRID HOLDER 2013-02-19 FEI FALCON I (4k x 4k) 14 20
For data processing Falcon 2 data were resampled to 1.41 Angstrom per pixel
 FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 2.7 1.2 3.6 59000.0 99290.0 FEI TITAN KRIOS AUTOGRID HOLDER 2013-01-21 FEI FALCON I (4k x 4k) 14 20
For data processing Falcon 2 data were resampled to 1.41 Angstrom per pixel
 FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 2.7 1.2 3.6 59000.0 99290.0 FEI TITAN KRIOS AUTOGRID HOLDER 2012-12-19 FEI FALCON I (4k x 4k) 14 20
For data processing Falcon 2 data were resampled to 1.41 Angstrom per pixel
 FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 2.7 1.2 3.6 59000.0 99290.0 FEI TITAN KRIOS AUTOGRID HOLDER 2012-11-30 FEI FALCON I (4k x 4k) 14 20
For data processing Falcon 2 data were resampled to 1.41 Angstrom per pixel
Particles were selected and extracted in batchboxer (EMAN 1.9).
per detector frame
 C1 OTHER 4.9 OTHER Spider, IMAGIC-5, CTFFIND3, RELION
An initial reconstruction was obtained using the angular reconstitution approach in Imagic-5. For visualization purposes the final map was amplitude and MTF-corrected in RELION.
232181 emd_2490.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 256 256 256 4 4 4 256 256 256 360.96 360.96 360.96 90.0 90.0 90.0 X Y Z -45.891220089999997 48.92898941 -0.04675274 3.829741 1.41 1.41 1.41 11.0 AUTHOR Structure of the 39S Large Subunit of the Mammalian Mitochondrial Ribosome
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 3V2D RIGID BODY FIT Chimera, O, COOT
Ribosomal proteins and rRNA were docked into the density using Chimera. Individual domains were manually fitted an rebuild using COOT and O.
REAL